View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_16 (Length: 526)
Name: NF11853_low_16
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10738635 - 10738916
Alignment:
| Q |
1 |
cttgaagctaaacttggaaccctcactgttgctgacttgctgctagtgctagctatctcccataattaatgaaatttataatgnnnnnnnaatgcttagt |
100 |
Q |
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| T |
10738635 |
cttgaagctaaacttggaaccctcactgttgctgacttgctgctagtgctagctatctcccaaaattaatgaaatttataatgtttttttaatgcttagt |
10738734 |
T |
|
| Q |
101 |
ttaatgtaagagcaatacacttatgtattatatgaagaatcacatgtactgtgattaaaataattaaaacatggtgtttgtaagtcatatgcactgttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10738735 |
ttaatgtaagagcaatacacttatgtattatatgaagaatcacatgtactgtgattaaaataattaaaacatggtgtttgtaagtcatatgcactgttat |
10738834 |
T |
|
| Q |
201 |
attttgctagtttatcttatttaacattactctttaaataatactaaaatatttgagaaaacaatgacttgatgcattactt |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10738835 |
attttgctagtttatcttatttaacattacactttaaataatactaaaatatttgagaaaacaatgacttgatgcattactt |
10738916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 10738932 - 10739041
Alignment:
| Q |
267 |
acttgatgcattacttattgagctgcaaaatacagtttgaatttgtatattggtcacaaaaatattagtt-aaacttttcacgtaatcacgagacatgtt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |
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| T |
10738932 |
acttgatgcattacttattgagctgcaaaatacagtttgaatttgtatattggtcacaaaagtaatagttaaaacttttcacttaatcacgagacatgtt |
10739031 |
T |
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| Q |
366 |
cctattcatt |
375 |
Q |
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|||||||||| |
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| T |
10739032 |
cctattcatt |
10739041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 453 - 526
Target Start/End: Original strand, 10739226 - 10739299
Alignment:
| Q |
453 |
atatcttgtgatggaaggagtataaaatattgtcccacaaattattagatgcataaaacattagaacaaataat |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10739226 |
atatcttgtgatggaaggagtataaaatattgtcccacaaattattagatgcataaaacattagaacaaataat |
10739299 |
T |
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