View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_18 (Length: 519)
Name: NF11853_low_18
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_18 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 2 - 500
Target Start/End: Complemental strand, 41544505 - 41544012
Alignment:
| Q |
2 |
attaaaagtgtgtctgatcaatgtatgtgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatat |
101 |
Q |
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| T |
41544505 |
attaaaagtgtgtctgatcaatgtatgcgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatat |
41544406 |
T |
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| Q |
102 |
aacaaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaatgttccctctcttgatattgggtctaagatagttcaac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544405 |
aacaaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaatgttccctctcttgatattgggtctaagatagttcaac |
41544306 |
T |
|
| Q |
202 |
catcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttactttggtttcaagtaacaacttttttcccctttcttttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544305 |
catcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttactttggtttcaagtaacaacttttttcccctttcttttc |
41544206 |
T |
|
| Q |
302 |
taaacttgtaaatttttcacttgtgacttgtgagtagtaataaattaaaagaataacttttgtcttatcacctgaattgtttgcaacagttttccatttc |
401 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544205 |
taaacttgtaaatttttcacttgtgacttttgagtagtaa-----taaaagaataacttttgtcttatcacctgaattgtttgcaacagttttccatttc |
41544111 |
T |
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| Q |
402 |
ttggcaccatgaatttggatgcattgtgctagcttttgatcttcctcttgggtccatgctcctctattcattgtttcctttgtaggtccatcttttctg |
500 |
Q |
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| T |
41544110 |
ttggcaccatgaatttggatgcattgtgctagcttttgatcttcctcttgggtccatgctcctctattcattgtttcctttgtaggtccatcttttctg |
41544012 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 37807947 - 37807865
Alignment:
| Q |
167 |
tccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaa-acctgcaaacaaa |
249 |
Q |
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||||||| ||||||| || || |||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||||||| |
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| T |
37807947 |
tccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct-ttcaagacctgcaaacaaa |
37807865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 2792051 - 2792089
Alignment:
| Q |
203 |
atcttagcctgcaactctttccacacctattcaaacctg |
241 |
Q |
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| T |
2792051 |
atcttagcctgcaactcttaccacacctattcaaccctg |
2792089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 5567 - 5600
Alignment:
| Q |
190 |
agatagttcaaccatcttagcctgcaactctttc |
223 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
5567 |
agatagttcaaccatcttagcctacaactctttc |
5600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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