View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11853_low_2 (Length: 1096)

Name: NF11853_low_2
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11853_low_2
NF11853_low_2
[»] chr7 (25 HSPs)
chr7 (1-536)||(10193160-10193704)
chr7 (535-1063)||(10192437-10192965)
chr7 (159-238)||(41387473-41387552)
chr7 (159-239)||(30610887-30610967)
chr7 (169-232)||(40121706-40121769)
chr7 (159-239)||(422742-422822)
chr7 (169-232)||(257355-257418)
chr7 (168-239)||(14092264-14092335)
chr7 (168-239)||(14402282-14402353)
chr7 (161-232)||(28909977-28910048)
chr7 (169-230)||(43167983-43168044)
chr7 (159-219)||(3973103-3973163)
chr7 (169-232)||(41670821-41670884)
chr7 (159-230)||(41709961-41710032)
chr7 (159-229)||(23721086-23721156)
chr7 (167-224)||(14091997-14092054)
chr7 (167-224)||(14402015-14402072)
chr7 (168-236)||(32000769-32000837)
chr7 (159-239)||(46753070-46753150)
chr7 (169-232)||(1661279-1661342)
chr7 (169-232)||(1663693-1663755)
chr7 (179-225)||(39079724-39079770)
chr7 (159-239)||(28359026-28359107)
chr7 (175-232)||(41389265-41389322)
chr7 (159-239)||(46870256-46870337)
[»] chr1 (29 HSPs)
chr1 (77-313)||(19459575-19459820)
chr1 (720-876)||(19460816-19460969)
chr1 (913-1041)||(19461064-19461192)
chr1 (162-232)||(41590316-41590386)
chr1 (159-231)||(19811100-19811172)
chr1 (169-232)||(8520181-8520244)
chr1 (169-232)||(17419740-17419803)
chr1 (169-232)||(31305664-31305727)
chr1 (161-232)||(33879866-33879937)
chr1 (161-232)||(33964318-33964389)
chr1 (161-231)||(45264608-45264678)
chr1 (159-232)||(6868076-6868149)
chr1 (161-214)||(14623152-14623205)
chr1 (535-588)||(19460615-19460668)
chr1 (169-232)||(19937131-19937194)
chr1 (169-232)||(20735475-20735538)
chr1 (165-232)||(34626862-34626929)
chr1 (169-232)||(43423232-43423295)
chr1 (159-228)||(51515657-51515727)
chr1 (159-232)||(12410348-12410421)
chr1 (162-239)||(40566347-40566424)
chr1 (191-248)||(41590604-41590661)
chr1 (160-248)||(18998655-18998743)
chr1 (159-239)||(33248411-33248491)
chr1 (159-239)||(33268583-33268663)
chr1 (161-232)||(2697419-2697490)
chr1 (161-232)||(4022213-4022284)
chr1 (159-231)||(12581432-12581505)
chr1 (159-232)||(13978528-13978601)
[»] chr8 (19 HSPs)
chr8 (159-232)||(30590391-30590464)
chr8 (169-232)||(18905809-18905872)
chr8 (159-248)||(38887044-38887133)
chr8 (159-238)||(26639054-26639133)
chr8 (161-232)||(31766946-31767017)
chr8 (159-232)||(23027593-23027666)
chr8 (169-232)||(20298604-20298667)
chr8 (169-232)||(21085236-21085299)
chr8 (161-232)||(23027916-23027987)
chr8 (169-232)||(36997119-36997182)
chr8 (161-232)||(44933169-44933240)
chr8 (169-232)||(21653279-21653343)
chr8 (169-232)||(21653756-21653820)
chr8 (159-230)||(28488422-28488493)
chr8 (161-219)||(3184004-3184062)
chr8 (160-232)||(15157026-15157098)
chr8 (167-232)||(40754395-40754461)
chr8 (167-232)||(22277475-22277540)
chr8 (159-232)||(34529930-34530003)
[»] chr5 (17 HSPs)
chr5 (159-232)||(4796301-4796374)
chr5 (159-232)||(31973522-31973595)
chr5 (169-232)||(13843650-13843713)
chr5 (169-232)||(13843966-13844029)
chr5 (169-231)||(20811407-20811469)
chr5 (161-232)||(873784-873855)
chr5 (169-232)||(27760344-27760407)
chr5 (161-232)||(28010204-28010275)
chr5 (169-231)||(20837762-20837824)
chr5 (175-232)||(1028181-1028238)
chr5 (159-232)||(24918107-24918180)
chr5 (161-232)||(37995722-37995793)
chr5 (170-232)||(27760029-27760091)
chr5 (159-232)||(15844312-15844385)
chr5 (159-232)||(24994015-24994088)
chr5 (159-232)||(28009885-28009958)
chr5 (180-232)||(17016181-17016233)
[»] chr2 (18 HSPs)
chr2 (178-239)||(3003988-3004049)
chr2 (169-232)||(3976559-3976622)
chr2 (161-232)||(15820189-15820260)
chr2 (169-232)||(43169195-43169258)
chr2 (159-228)||(18183409-18183478)
chr2 (159-232)||(26760914-26760987)
chr2 (160-232)||(18959505-18959577)
chr2 (169-232)||(3976243-3976306)
chr2 (169-232)||(3977091-3977154)
chr2 (169-232)||(18901952-18902015)
chr2 (169-232)||(21213973-21214036)
chr2 (169-232)||(43195737-43195800)
chr2 (159-211)||(21373926-21373978)
chr2 (172-232)||(23054282-23054342)
chr2 (161-232)||(5424844-5424915)
chr2 (169-232)||(17509062-17509125)
chr2 (169-232)||(21214289-21214352)
chr2 (170-239)||(11339777-11339846)
[»] chr3 (23 HSPs)
chr3 (159-231)||(662669-662741)
chr3 (159-248)||(25568440-25568529)
chr3 (169-232)||(4256187-4256250)
chr3 (169-232)||(44573279-44573342)
chr3 (169-232)||(13769379-13769442)
chr3 (161-228)||(24860152-24860219)
chr3 (169-232)||(41380677-41380740)
chr3 (169-232)||(43101459-43101522)
chr3 (169-232)||(45443233-45443296)
chr3 (169-232)||(50203945-50204008)
chr3 (169-232)||(54368992-54369055)
chr3 (159-232)||(14170087-14170160)
chr3 (159-232)||(34250440-34250513)
chr3 (169-226)||(44573908-44573965)
chr3 (161-232)||(3985718-3985789)
chr3 (169-232)||(4255463-4255526)
chr3 (173-232)||(27219286-27219345)
chr3 (159-239)||(39225106-39225190)
chr3 (164-227)||(54861473-54861536)
chr3 (169-232)||(44573595-44573655)
chr3 (159-239)||(51917823-51917903)
chr3 (169-232)||(34715543-34715606)
chr3 (175-232)||(48685405-48685463)
[»] chr4 (25 HSPs)
chr4 (169-232)||(991157-991220)
chr4 (169-232)||(50857965-50858028)
chr4 (169-232)||(50858281-50858344)
chr4 (161-232)||(53738296-53738367)
chr4 (169-232)||(53740135-53740198)
chr4 (163-228)||(30491043-30491108)
chr4 (161-232)||(15665097-15665169)
chr4 (169-232)||(990500-990563)
chr4 (169-228)||(990991-991050)
chr4 (169-232)||(45427340-45427403)
chr4 (169-232)||(52214568-52214631)
chr4 (167-232)||(43972306-43972371)
chr4 (160-228)||(26942679-26942747)
chr4 (160-243)||(52043155-52043238)
chr4 (161-228)||(56509554-56509621)
chr4 (161-231)||(43971984-43972054)
chr4 (159-208)||(44898834-44898883)
chr4 (175-232)||(45427024-45427081)
chr4 (159-239)||(48046299-48046380)
chr4 (160-232)||(26942959-26943031)
chr4 (169-232)||(29669451-29669513)
chr4 (169-232)||(29669766-29669828)
chr4 (169-232)||(29734514-29734577)
chr4 (169-232)||(32988358-32988421)
chr4 (161-232)||(36558554-36558625)
[»] chr6 (18 HSPs)
chr6 (169-232)||(10418426-10418489)
chr6 (169-232)||(24055197-24055260)
chr6 (159-229)||(9602078-9602148)
chr6 (159-228)||(1205956-1206025)
chr6 (175-232)||(1408970-1409027)
chr6 (159-247)||(16509719-16509808)
chr6 (159-231)||(1205639-1205711)
chr6 (164-226)||(130761-130824)
chr6 (169-232)||(19054446-19054509)
chr6 (169-230)||(21043871-21043932)
chr6 (169-230)||(21067147-21067208)
chr6 (169-230)||(21088938-21088999)
chr6 (161-230)||(32215853-32215922)
chr6 (176-232)||(10733526-10733582)
chr6 (169-232)||(1744930-1744993)
chr6 (161-232)||(12134571-12134642)
chr6 (169-232)||(19753692-19753755)
chr6 (166-228)||(31965-32027)


Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 10193704 - 10193160
Alignment:
Q  1 gaatcttgctcgcttagattgtatttccgctcctctgttgaaactgatggtagtggactttgttctcttccttgccaaggaccttagtctttatgattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193704 gaatcttgctcgcttagattgtatttccgctcctctgttgaaactgatggtagtggactttgttctcttccttgccaaggaccttagtctttatgattga 10193605  T
Q  101 attttgacatacaccctgttggaaattccgccttaattggtgtttgccctagctgcctcatttg---------ggttgccttaattgcagcctccaactc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  10193604 attttgacatacaccctgttggaaattccgccttaattggtgtttgccctagctgcctcatttgcggcatttgggttgccttaattgcagcctccaactc 10193505  T
Q  192 ctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatgaactaaacagggcataggaagcttggacaatcttcaccttaaaa 291  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10193504 ctttattgtgttgtgtgtgagggggtgggtttagtcccgcaatgtctaaagacatgaactaaacagggcataggaagcttggacaatcttcaccttacaa 10193405  T
Q  292 gtcaatttttagggttgaccagttaagctgcacacaagcttcgtgtacttaacaagtcaatttttagttacatggtttttggtaagctatgtgtggtcta 391  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10193404 gtcaatttttagggttgaccagttaagctgcacacaagcttcatgtacttaacaagtcaatttttagttacatggcttttggtaagctatgtgtggtcta 10193305  T
Q  392 caccactgagggtgtacttaactaactgatcaagttagtggaataagcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacat 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193304 caccactgagggtgtacttaactaactgatcaagttagtggaataagcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacat 10193205  T
Q  492 ggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10193204 ggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt 10193160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 535 - 1063
Target Start/End: Complemental strand, 10192965 - 10192437
Alignment:
Q  535 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaattcaactccttcattttgctctagctnnnnnnnttctactccctca 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||     
T  10192965 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaactcaactccttcattttgctctagctcccccccttctactccctcg 10192866  T
Q  635 aattcttccttcacaatcatcaccatgaaatgttttacaaacatgtgaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatag 734  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  10192865 aattcttccttcacaatcatcaccatgaaatgttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatag 10192766  T
Q  735 atcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgct 834  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10192765 atcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgct 10192666  T
Q  835 aagagttccttcacatgtccatgttgatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgccca 934  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10192665 aagagttccttcacatgtccatgtagatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgccca 10192566  T
Q  935 aatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcattttgatacatagat 1034  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | |||    
T  10192565 aatctgttttacatttctttttctgtattttacatatctgttctctctattttagtttggtatagctgtggggtaagttggggcattttgatacttggat 10192466  T
Q  1035 tgttatacttatatgcagaatctgtgtta 1063  Q
    |||||||||||||||||||||||||||||    
T  10192465 tgttatacttatatgcagaatctgtgtta 10192437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 41387473 - 41387552
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcct 238  Q
    ||||||||||||||| |||||| |||||||| |||| |||||||| ||| ||| |||||||||||||||||||| |||||    
T  41387473 catttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgcct 41387552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 30610967 - 30610887
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||| |||| || |||| ||||||    
T  30610967 catttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctcacattgccta 30610887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 40121769 - 40121706
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| |||||    
T  40121769 gccttaattgcagcctccaacacctttattgtgttggctttgagggggtggatttagttccaca 40121706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 422822 - 422742
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    ||||||||||||||  |||||||| |||||| |||| |||||||||||||||| ||||||  |||| ||||||| ||||||    
T  422822 catttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgactttaatcccacattgccta 422742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 257418 - 257355
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  257418 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 14092335 - 14092264
Alignment:
Q  168 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||||||||| |||| |||| | |||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  14092335 tgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgccta 14092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 14402353 - 14402282
Alignment:
Q  168 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||||||||| |||| |||| | |||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  14402353 tgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgccta 14402282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 28909977 - 28910048
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| |||| || ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  28909977 tttggtttgctttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 28910048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 43168044 - 43167983
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||    
T  43168044 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccca 43167983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 3973103 - 3973163
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgg 219  Q
    ||||||||||||||| |||||||||| |||| |||| || ||||||||| |||||||||||    
T  3973103 catttgggttgccttcattgcagccttcaacaccttcatcgtgttgggtttgagggggtgg 3973163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 41670821 - 41670884
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| || | |||||||||| | ||||||||||| ||||||||||||    
T  41670821 gccttcattgcagcctccaacaccctcattgtgttggctttgagggggtggatttagtcccaca 41670884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 41709961 - 41710032
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||| ||| |||||| |||||||| |||| |||||||||| | ||||||||||| ||||||||||    
T  41709961 catttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtccca 41710032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 23721086 - 23721156
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccc 229  Q
    ||||||||||||||| |||||||||||||||  | | ||||||||||   ||| |||||||||||||||||    
T  23721086 catttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaaggggtgggtttagtccc 23721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 14092054 - 14091997
Alignment:
Q  167 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggttta 224  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||| ||| | ||||||    
T  14092054 ttgccttcattgcagcctccaacaccttcattgtgttgggtgtgacgggttaggttta 14091997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 14402072 - 14402015
Alignment:
Q  167 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggttta 224  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||| ||| | ||||||    
T  14402072 ttgccttcattgcagcctccaacaccttcattgtgttgggtgtgacgggttaggttta 14402015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 32000769 - 32000837
Alignment:
Q  168 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgc 236  Q
    |||||| |||||||||| |||| |||| || ||||||| | ||||||| ||| ||||||||||||||||    
T  32000769 tgccttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgc 32000837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 46753070 - 46753150
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    ||||||||||||||| || ||||||||||||   ||  ||||||||||||||| ||||| | |||||||| ||| ||||||    
T  46753070 catttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagtccaacattgccta 46753150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 1661342 - 1661279
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||| ||||| | ||| ||||||| ||||||||||||    
T  1661342 gccttcattgcagcctccaacaccttcattgcgttggctttgacggggtggatttagtcccaca 1661279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 1663755 - 1663693
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  1663755 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 1663693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 39079770 - 39079724
Alignment:
Q  179 cagcctccaactcctttattgtgttgggtgtgagggggtgggtttag 225  Q
    ||||||||||| |||| |||||||||||||||| ||||||| |||||    
T  39079770 cagcctccaacaccttcattgtgttgggtgtgaaggggtggatttag 39079724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 28359026 - 28359107
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccacaatgccta 239  Q
    |||||||||| |||| ||||||||||||||| |||| ||| | ||||||||| |  |||||| || ||||||||| ||||||    
T  28359026 catttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaatgggtggattcagtcccacattgccta 28359107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 41389265 - 41389322
Alignment:
Q  175 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||  |||| |||| |||||||| ||||||| ||||||| ||||||||||||    
T  41389265 attgcagccatcaacaccttcattgtgttaggtgtgaaggggtggatttagtcccaca 41389322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 46870256 - 46870337
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccacaatgccta 239  Q
    |||||||| |||| |  |||||||||||||| | || ||||| | |||||||| |||||||| |||||||||||| ||||||    
T  46870256 catttgggctgccatctttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgccta 46870337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 5e-93; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 77 - 313
Target Start/End: Original strand, 19459575 - 19459820
Alignment:
Q  77 aaggaccttagtctttatgattgaattttgacatacaccctgttggaaattccgccttaattggtgtttgccctagctgcct---------catttgggt 167  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||         |||||||||    
T  19459575 aaggacctcagcctttatgattgaattttgacatacaccttgttggaaattccgccttaattggtgtctgccctagctgccttacttgcggcatttgggt 19459674  T
Q  168 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatgaactaaacagggcataggaa 267  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  19459675 tgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagtcatgacctaaacagagcataggaa 19459774  T
Q  268 gcttggacaatcttcaccttaaaagtcaatttttagggttgaccag 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19459775 gcttggacaatcttcaccttacaagtcaatttttagggttgaccag 19459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 720 - 876
Target Start/End: Original strand, 19460816 - 19460969
Alignment:
Q  720 ctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgtt 819  Q
    ||||||||||||||||||||||||||||| |||||||||||| || ||||| |   ||| ||||||||||  ||||| ||||||||||||| | ||||||    
T  19460816 ctccttctgaaatagatcaaatcctcttccccttgttcttatcagtcacttat---ttattactgattctattgacagaatttgttaccctgccaatgtt 19460912  T
Q  820 ggtagcttggttgctaagagttccttcacatgtccatgttgatcttcctggttcttg 876  Q
    ||||||||||||||  ||||||||||||||| ||  ||| |||||||||||||||||    
T  19460913 ggtagcttggttgcggagagttccttcacatctctgtgtagatcttcctggttcttg 19460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 913 - 1041
Target Start/End: Original strand, 19461064 - 19461192
Alignment:
Q  913 tgttgatattgatatatgcccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagt 1012  Q
    ||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| | ||||| ||||||||| |    
T  19461064 tgttgatattgatgtatgaacaaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggtaaat 19461163  T
Q  1013 tggggcattttgatacatagattgttata 1041  Q
    ||||||||||||||||   ||||||||||    
T  19461164 tggggcattttgatactcggattgttata 19461192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 41590386 - 41590316
Alignment:
Q  162 ttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||||| ||||||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||    
T  41590386 ttgggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaaggggtgggtttagttccaca 41590316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 19811172 - 19811100
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||| |  |||| |||||||||||    
T  19811172 catttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaagatgtggatttagtcccac 19811100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 8520244 - 8520181
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  8520244 gccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccaca 8520181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 17419740 - 17419803
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  17419740 gccttaattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtcccaca 17419803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 31305664 - 31305727
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  31305664 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 31305727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 33879937 - 33879866
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||| |||||| ||||||||||||    
T  33879937 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccaca 33879866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33964318 - 33964389
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||| |||||| ||||||||||||    
T  33964318 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccaca 33964389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 45264608 - 45264678
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    ||||| |||||||  |||||||||||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  45264608 tttggtttgccttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 45264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 6868076 - 6868149
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||| | | ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||||||||||    
T  6868076 catttgggttgccctcactgcagcctccaacaccttcattttgttgggtttgaaggggtggatttagtcccaca 6868149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 14623152 - 14623205
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgaggg 214  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||    
T  14623152 tttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtaaggg 14623205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 535 - 588
Target Start/End: Original strand, 19460615 - 19460668
Alignment:
Q  535 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaa 588  Q
    ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||    
T  19460615 gtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaaagaa 19460668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 19937194 - 19937131
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||||| |||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  19937194 gccttaattgcatcctccaacaccttcattgtgttggctttgatggggtggatttagtcccaca 19937131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 20735475 - 20735538
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| |||| |||||||    
T  20735475 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttaatcccaca 20735538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 34626929 - 34626862
Alignment:
Q  165 ggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||||| || |||| ||||||| ||||    
T  34626929 ggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtggatttagtctcaca 34626862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 43423232 - 43423295
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||| |||||||||||||||| |||| |||||||||| | ||||||||||| |||| |||||||    
T  43423232 gcctaaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttattcccaca 43423295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 51515657 - 51515727
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcc 228  Q
    ||||||| ||||||| ||||| ||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  51515657 catttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtcc 51515727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 12410348 - 12410421
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||| ||||  |||||||||||||| |||| || ||||||||||||| || || | ||||||||||||    
T  12410348 catttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccaca 12410421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 40566424 - 40566347
Alignment:
Q  162 ttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||||||||||| ||| |||| |||||| |||| |||||||||||||||| ||| ||| || ||||||| | ||||||    
T  40566424 ttgggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggatggattcagtcccatattgccta 40566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 41590661 - 41590604
Alignment:
Q  191 cctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 248  Q
    |||| |||||||||||||||||||||||  |||||||||||| |||||| ||| ||||    
T  41590661 ccttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatga 41590604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 18998655 - 18998743
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 248  Q
    |||||||||  ||| ||||||||| ||||| ||||   ||||||||||||||  |||||| |||||||||||| |||||| ||| ||||    
T  18998655 atttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaagggtggatttagtcccacattgcctagagatatga 18998743  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 33248491 - 33248411
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||| ||||||| |||||||||  ||||||| |||| |||||||||||||| |  |||||| ||||||| |||| ||||||    
T  33248491 cattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgccta 33248411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 33268663 - 33268583
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||| ||||||| |||||||||  ||||||| |||| |||||||||||||| |  |||||| ||||||| |||| ||||||    
T  33268663 cattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgccta 33268583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 2697490 - 2697419
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||| ||| ||||||||||||||| |||| ||||||  || | ||||||||||| ||||||||||||    
T  2697490 tttggtttgtcttcattgcagcctccaacaccttcattgtgacggctttgagggggtggatttagtcccaca 2697419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 4022284 - 4022213
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| |||||||  | ||| |||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  4022284 tttggtttgccttcgtcgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 4022213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 12581505 - 12581432
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccac 231  Q
    |||||||||||||||  || |||| |||||| |||| ||||||||||||||| |  |||||| |||||||||||    
T  12581505 catttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccac 12581432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 13978528 - 13978601
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||| |||||||| |||||| |||||||  | || |||||||||||||||| ||| ||  ||||||||||||    
T  13978528 catttgtgttgccttcattgcatcctccaatacgttcattgtgttgggtgtgaagggatgtctttagtcccaca 13978601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 5e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 30590391 - 30590464
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||| ||||||| ||||||| ||||||||||||    
T  30590391 catttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccaca 30590464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 18905809 - 18905872
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  18905809 gccttaattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtcccaca 18905872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 38887044 - 38887133
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 248  Q
    |||||||||||||||  |||||||||||||| |||| |||||||||||||||| ||||| | |||| ||||||| |||||| ||| ||||    
T  38887044 catttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaaggggttgatttaatcccacattgcctagagatatga 38887133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 26639054 - 26639133
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcct 238  Q
    |||||||||| |||| ||||||| | ||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||    
T  26639054 catttgggtttccttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgcct 26639133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 31766946 - 31767017
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  31766946 tttggtttgccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccaca 31767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23027666 - 23027593
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||| ||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  23027666 catttggcttgccttcattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtcccaca 23027593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 20298667 - 20298604
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  20298667 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 20298604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 21085299 - 21085236
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  21085299 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 21085236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 23027987 - 23027916
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| |||||||||| |||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  23027987 tttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccaca 23027916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 36997119 - 36997182
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  36997119 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 36997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 44933240 - 44933169
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||||| ||| ||||||| ||||||| ||||    
T  44933240 tttgggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcaca 44933169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 21653279 - 21653343
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  21653279 gccttaattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 21653343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 21653756 - 21653820
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  21653756 gccttaattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 21653820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 28488493 - 28488422
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    |||||| |||||||| ||||||||||  ||| |||| |||||||||||| ||| ||||||| ||||||||||    
T  28488493 catttgagttgccttcattgcagccttaaacaccttcattgtgttgggtttgaaggggtggatttagtccca 28488422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 3184062 - 3184004
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgg 219  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||||||||||    
T  3184062 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtgg 3184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 15157026 - 15157098
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||| ||||||||||||||||||   | ||  |||||||||||||||  |||||| ||||||||||||    
T  15157026 atttgggttcccttaattgcagcctccattgcgttcgttgtgttgggtgtgaaagggtggatttagtcccaca 15157098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 40754395 - 40754461
Alignment:
Q  167 ttgccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 232  Q
    ||||||| ||||||||||||||| |||| |||||||||| | ||| ||||||||  |||||||||||    
T  40754395 ttgccttcattgcagcctccaacaccttcattgtgttggctttgaggggggtggacttagtcccaca 40754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 22277475 - 22277540
Alignment:
Q  167 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||||||||||| | || ||| |||||| | ||||||||||  ||||||||||||    
T  22277475 ttgccttcattgcagcctccaacactttcattttgttggctttgagggggtgaatttagtcccaca 22277540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 34529930 - 34530003
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| |||  ||||||| |  |||| |||||||||||||| | |||| || ||||||||||||    
T  34529930 catttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtcccaca 34530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 5e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 4796301 - 4796374
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||||||| ||||    
T  4796301 catttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagtcacaca 4796374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 31973595 - 31973522
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||| |||||||| ||||||||||||||| |||| ||||||||||||||||  |||||| ||||||||||||    
T  31973595 catttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaagggtggatttagtcccaca 31973522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 13843650 - 13843713
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13843650 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13843713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 13843966 - 13844029
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13843966 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13844029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 20811407 - 20811469
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  20811407 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 20811469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 873855 - 873784
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| |||||||| |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  873855 tttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 873784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 27760344 - 27760407
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  27760344 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 27760407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 28010275 - 28010204
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| |||||||||| |||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  28010275 tttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccaca 28010204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 20837762 - 20837824
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    |||||||||||||| |||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  20837762 gccttaattgcagcatccaacaccttcattgtgttggctttgagggggtggatttagtcccac 20837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 1028238 - 1028181
Alignment:
Q  175 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  1028238 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 1028181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 24918107 - 24918180
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||| |||||| | |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24918107 catttggtttgccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 37995793 - 37995722
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||| |||| |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  37995793 tttggtttgccttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 37995722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 27760029 - 27760091
Alignment:
Q  170 ccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||| ||||||||||||||| | || |||||||||| | ||||||||||| ||||||||||||    
T  27760029 ccttcattgcagcctccaacactttcattgtgttggctttgagggggtggatttagtcccaca 27760091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 15844385 - 15844312
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||| ||||  ||||| ||| |||| |||| ||||||||| |||||| ||||||| ||||||||||||    
T  15844385 catttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtcccaca 15844312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 24994015 - 24994088
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| || |||| |||||| | |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24994015 catttggtttaccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24994088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 28009958 - 28009885
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||| ||||||||||| ||| ||||  ||||||||| | |||||| |||| ||||||||||||    
T  28009958 catttggcttgccttcattgcagcctcaaacaccttctttgtgttggctttgagggcgtggatttagtcccaca 28009885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 17016233 - 17016181
Alignment:
Q  180 agcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  17016233 agcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 17016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 5e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 3004049 - 3003988
Alignment:
Q  178 gcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3004049 gcagcctccaacaccttcattgtgttgggtgtgaggggatgggtttagtcccacaatgccta 3003988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 3976622 - 3976559
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  3976622 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 3976559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 15820260 - 15820189
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  15820260 tttggtttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 15820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 43169195 - 43169258
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  43169195 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 43169258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 18183409 - 18183478
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    |||||| |||||||| ||||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||    
T  18183409 catttgagttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatgggatggatttagtcc 18183478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 26760987 - 26760914
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| || ||||| | |||| |||||||||||||| || ||| ||||||||||||||||||||    
T  26760987 catttgggttgccttgatggcagcattcaacacctttattgtgttgagtttgaaggggtgggtttagtcccaca 26760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 18959505 - 18959577
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||| |||| ||||||||| ||| | |||| |||||| ||||||||||||||||||||||||| ||||    
T  18959505 atttgggttcccttcattgcagccaccagcgccttcattgtgctgggtgtgagggggtgggtttagtctcaca 18959577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 3976306 - 3976243
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| ||| |||||| | ||||||||||| ||||||||||||    
T  3976306 gccttaattgcagcctccaacaccttcattatgttggctttgagggggtggatttagtcccaca 3976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 3977154 - 3977091
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  3977154 gccttaattgcagcctctaacaccttcattgtgttggctctgagggggtggatttagtcccaca 3977091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 18902015 - 18901952
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  18902015 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 18901952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 21214036 - 21213973
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||| ||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  21214036 gccttaattgccgcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 21213973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 43195737 - 43195800
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||| | ||||||||||||    
T  43195737 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtagatttagtcccaca 43195800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21373926 - 21373978
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtga 211  Q
    |||||| |||||||| ||||||||||||||| || ||||||||||||||||||    
T  21373926 catttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtga 21373978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 23054282 - 23054342
Alignment:
Q  172 ttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  23054282 ttaattgcagcctccaacaccttcaatgtgttggctttgagggggtggatttagtcccaca 23054342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 5424915 - 5424844
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| || |||| ||||||||||||||| |||| |||||||||  | |||| |||||||||||||||||||    
T  5424915 tttggttttccttcattgcagcctccaacaccttcattgtgttgcctttgagagggtgggtttagtcccaca 5424844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 17509062 - 17509125
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||| ||||||    
T  17509062 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagccccaca 17509125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 21214352 - 21214289
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||| ||||||||  |||| |||||||||| | ||||||||||| ||||||||||||    
T  21214352 gccttaattgccgcctccaaaaccttcattgtgttggctttgagggggtggatttagtcccaca 21214289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 11339846 - 11339777
Alignment:
Q  170 ccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    |||| ||||||||||||||| |||| |||||||| |||| ||  |||||| |||||||||||| ||||||    
T  11339846 cctttattgcagcctccaacaccttcattgtgttaggtgcgaaagggtggatttagtcccacactgccta 11339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 662669 - 662741
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||    
T  662669 catttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaaggggtcgatttagtcccac 662741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 25568440 - 25568529
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 248  Q
    ||||||||||||||  ||||||||||||||| ||||   |||||||||||||| |||||||||||||  ||||| |||||| ||||||||    
T  25568440 catttgggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatga 25568529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 4256187 - 4256250
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  4256187 gccttcattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtcccaca 4256250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 44573279 - 44573342
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  44573279 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 44573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 13769442 - 13769379
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13769442 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13769379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 24860219 - 24860152
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||    
T  24860219 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcc 24860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 41380677 - 41380740
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  41380677 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 41380740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 43101522 - 43101459
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  43101522 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 43101459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 45443233 - 45443296
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  45443233 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 45443296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 50204008 - 50203945
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||||||||||| ||||    
T  50204008 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtgggtttagtctcaca 50203945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 54368992 - 54369055
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  54368992 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 54369055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 14170160 - 14170087
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||| ||||||||||||| | |||| |||||||||| | ||||||| ||| ||||||||||||    
T  14170160 catttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgaggggctggatttagtcccaca 14170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 34250513 - 34250440
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||| ||| ||| ||||||  ||| ||||||||    
T  34250513 catttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaaggggtgaatttcgtcccaca 34250440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 44573908 - 44573965
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagt 226  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||    
T  44573908 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 44573965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 3985718 - 3985789
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| || |||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  3985718 tttggtttgccttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 3985789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 4255463 - 4255526
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| |||| |||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  4255463 gccttcattgtagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 4255526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 27219286 - 27219345
Alignment:
Q  173 taattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||| |||| || ||||||| | ||||||||||| ||||||||||||    
T  27219286 taattgcagcctccaacaccttcatcgtgttggctttgagggggtggatttagtcccaca 27219345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 39225190 - 39225106
Alignment:
Q  159 catttgggttgccttaattgcagcctccaact----cctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    ||||||||||||||| | |||||||||||||     |||| |||||||||||||||| || |||||||||||||| || ||||||    
T  39225190 catttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgccta 39225106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 54861473 - 54861536
Alignment:
Q  164 gggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtc 227  Q
    |||||| ||| ||||||||||||||| ||||  ||||||||||||||| ||||||| |||||||    
T  54861473 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 54861536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 44573595 - 44573655
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| ||   |||||||||| | ||||||||||| ||||||||||||    
T  44573595 gccttaattgcagcctccaacacc---attgtgttggctttgagggggtggatttagtcccaca 44573655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 51917823 - 51917903
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 239  Q
    ||||||||||||||| |||||| ||| |||| |||| ||| ||||| ||||||  |||||| |||||||| ||| ||||||    
T  51917823 catttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagtcctacattgccta 51917903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 34715606 - 34715543
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| || |||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  34715606 gccttcatcgcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 34715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 48685463 - 48685405
Alignment:
Q  175 attgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 232  Q
    ||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  48685463 attgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 48685405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 991157 - 991220
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  991157 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 991220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 50857965 - 50858028
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  50857965 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 50858028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 50858281 - 50858344
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  50858281 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 50858344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 53738367 - 53738296
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  53738367 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 53738296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 53740135 - 53740198
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  53740135 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 53740198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 30491108 - 30491043
Alignment:
Q  163 tgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    ||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||| ||||||||    
T  30491108 tgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagtcc 30491043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 15665097 - 15665169
Alignment:
Q  161 tttgggtt-gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||||| ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  15665097 tttgggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 15665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 990500 - 990563
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||  ||||||||||||    
T  990500 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtgaatttagtcccaca 990563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 990991 - 991050
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||    
T  990991 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcc 991050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 45427403 - 45427340
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  45427403 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 45427340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 52214568 - 52214631
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  52214568 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 52214631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 43972306 - 43972371
Alignment:
Q  167 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||  ||||||||||||    
T  43972306 ttgccttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtcccaca 43972371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 26942747 - 26942679
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    |||||||||| ||| |||||| |||||||| | || |||||||||||||||| ||||||| ||||||||    
T  26942747 atttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtcc 26942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 52043238 - 52043155
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaaga 243  Q
    ||||| |||| ||| ||||||||||||||| |||| ||||| | |||||||| ||||||| ||||||| |||| |||| |||||    
T  52043238 atttgtgttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaaga 52043155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 56509554 - 56509621
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    ||||| ||||||| |||||||| |||||| |||| |||||||||| | ||||||||||| ||||||||    
T  56509554 tttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcc 56509621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 43971984 - 43972054
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    ||||| || |||| ||||||||||||||| |||| |||||||||| | | ||||||||| |||||||||||    
T  43971984 tttggtttaccttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtcccac 43972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 44898883 - 44898834
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtg 208  Q
    |||||||| |||||| ||||||||||||||| |||| |||||||||||||    
T  44898883 catttgggctgccttcattgcagcctccaacaccttcattgtgttgggtg 44898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 45427081 - 45427024
Alignment:
Q  175 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||| ||||||    
T  45427081 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagccccaca 45427024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 48046299 - 48046380
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccacaatgccta 239  Q
    |||| |||||||||| |||||| |||||||| |||| | | ||||||||||| | ||||||| |||||||||||| ||||||    
T  48046299 cattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattgccta 48046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 26943031 - 26942959
Alignment:
Q  160 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    |||||| ||| ||| |||||||||| |||| ||||||||||||||||||||| | ||||  ||||||| ||||    
T  26943031 atttggattgtcttcattgcagccttcaacacctttattgtgttgggtgtgaagaggtgaatttagtctcaca 26942959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 29669513 - 29669451
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  29669513 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 29669451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 29669828 - 29669766
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  29669828 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 29669766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 29734514 - 29734577
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||  | ||||||||||  ||||||||||||    
T  29734514 gccttcattgcagcctccaacaccttcattgtgttgactttgagggggtgaatttagtcccaca 29734577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 32988421 - 32988358
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||| ||||| |||| |||||||||| | ||||| ||||| ||||||||||||    
T  32988421 gccttcattgcagcccccaacaccttcattgtgttggctttgaggtggtggatttagtcccaca 32988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 36558625 - 36558554
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| || ||| |||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  36558625 tttggtttgccttcatagcaacctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 36558554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 10418489 - 10418426
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  10418489 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 10418426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 24055260 - 24055197
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24055260 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24055197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 9602148 - 9602078
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccc 229  Q
    ||||||| ||||||| ||| |||| |||||| |||| |||||||||||||||| ||||||| |||||||||    
T  9602148 catttggattgccttcattccagcttccaacaccttcattgtgttgggtgtgaaggggtggatttagtccc 9602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 1206025 - 1205956
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    ||||||||||||||| ||||||||||||| | |||| || ||||| ||||||| ||||||| ||||||||    
T  1206025 catttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtgtgaaggggtggatttagtcc 1205956  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 1408970 - 1409027
Alignment:
Q  175 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  1408970 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 1409027  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 16509719 - 16509808
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttatt-gtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatg 247  Q
    ||||||||||||||| |||||||| | |||| |||| ||| ||| ||| |||||  |||||| |||||||||||| ||||||||||||||    
T  16509719 catttgggttgccttcattgcagctttcaacgccttcatttgtgatggatgtgaacgggtggatttagtcccacattgcctaaagacatg 16509808  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 1205711 - 1205639
Alignment:
Q  159 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 231  Q
    |||||||||| |||| |||||||||| |||| | || |||||||||||||||| ||||||| || ||||||||    
T  1205711 catttgggtttccttcattgcagcctacaacactttcattgtgttgggtgtgaaggggtggattcagtcccac 1205639  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 130824 - 130761
Alignment:
Q  164 gggttgccttaattgcagcctccaact-cctttattgtgttgggtgtgagggggtgggtttagt 226  Q
    |||||||||| |||||||||||||||  |||| |||||||||||||||| ||||||| ||||||    
T  130824 gggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 19054446 - 19054509
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  19054446 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 19054509  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 21043932 - 21043871
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21043932 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21043871  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 21067208 - 21067147
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21067208 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21067147  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 21088999 - 21088938
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21088999 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21088938  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 32215853 - 32215922
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 230  Q
    ||||| ||||||| ||||||||||||||| |||| ||| |||||| | |||| |||||| ||||||||||    
T  32215853 tttggtttgccttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagtccca 32215922  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 10733582 - 10733526
Alignment:
Q  176 ttgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||||||||||||  ||| |||||||||| | ||||||||||| ||||||||||||    
T  10733582 ttgcagcctccaacatcttcattgtgttggctttgagggggtggatttagtcccaca 10733526  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 1744993 - 1744930
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||||||||||| |||| |||||||| | | |||||||||||  |||||||||||    
T  1744993 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggagttagtcccaca 1744930  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 12134642 - 12134571
Alignment:
Q  161 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| ||||||| ||||||||||||||  |||| |||||||||| | ||| |||||||  |||||||||||    
T  12134642 tttggtttgccttcattgcagcctccaataccttcattgtgttggctttgacggggtggacttagtcccaca 12134571  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 19753755 - 19753692
Alignment:
Q  169 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 232  Q
    ||||| |||||||||| |||| |||| |||||||| | | ||||||||||| ||||||||||||    
T  19753755 gcctttattgcagcctgcaacaccttcattgtgttagctttgagggggtggatttagtcccaca 19753692  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 32027 - 31965
Alignment:
Q  166 gttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 228  Q
    |||||||| ||||||| ||||||| |||| ||| |||||| | ||||||||||| ||||||||    
T  32027 gttgccttcattgcagtctccaacaccttcattttgttggctttgagggggtggatttagtcc 31965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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