View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_22 (Length: 473)
Name: NF11853_low_22
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_22 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0188 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 473
Target Start/End: Complemental strand, 38953164 - 38952698
Alignment:
| Q |
7 |
ttaataactttaactatagtggtgttcttccataaaaagtatcttcataacttaaaaagaaattcataagaatagggttatcaaaaactagaagcatgtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953164 |
ttaataactttaactatagtggtgttcttccataaaaagtatcttcataacttaaaaagaaattcataagaatagggttatcaaaaactagaagcatgtg |
38953065 |
T |
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| Q |
107 |
aggaaaaatttgtnnnnnnnntgtgcatagtaactaatagtagttgcgttgatcagttgacattgattctttaataggagatctataggtgttataagtt |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38953064 |
aggaaaaatttgtaaaaaaaatgtgcatagtaactaatagtagttgcgttgatcagttgacattgattctttaataggagatctaaaggtgttataagtt |
38952965 |
T |
|
| Q |
207 |
atagttagttgtgattagccttttgaaaggaattggtagctcagtatgttttttgtctggtgtctacaatgtggacatgagtcttttgtgagccaaactt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38952964 |
atagttagttgtgattagccttttgaaaggaattggtagctcagtatgttttttgtctggtgtctacaatgtggacatgagtcttttgtgagccaaactt |
38952865 |
T |
|
| Q |
307 |
cggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgtgctttatgaatcttggttgtgttatgtgtacattctttttctacaagaaccat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38952864 |
cggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgtgctttatgaatcttggttgtgttatgtgtacattctttttctacaagaaccat |
38952765 |
T |
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| Q |
407 |
gtggtcaattgagttgtattaagttattgtcattcttttcttatttaaaatcaatgttatattgtta |
473 |
Q |
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| T |
38952764 |
gtggtcaattgagttgtattaagttattgtcattcttttcttatttaaaatcaatgttatattgtta |
38952698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 256 - 470
Target Start/End: Original strand, 28003196 - 28003411
Alignment:
| Q |
256 |
tttttgtctggtgtctacaat--gtggacatgagtcttttgtgagccaaacttcggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgt |
353 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28003196 |
tttttgtctggtgtgtacaatatgtggacatgagtcttttgtgagccaaacttcggcatcctatatcctcatcctctcctcaatgcctggtgtaagttgt |
28003295 |
T |
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| Q |
354 |
gctttatgaatcttggttgtgttatgtgtacattctttttctacaagaaccatgtggtcaattgagttgtattaagttattgtcattcttttcttattta |
453 |
Q |
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|||| ||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||| || | ||||| ||||||||||| |
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| T |
28003296 |
gcttactgaatcttggttgtgctatctggacattctttttctataagaaccatgtggtcaattgagttgtattaa-ttgctttcattattttcttatttg |
28003394 |
T |
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| Q |
454 |
aaatcaatgttatattg |
470 |
Q |
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||||||||||||||||| |
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| T |
28003395 |
aaatcaatgttatattg |
28003411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 22966763 - 22967049
Alignment:
| Q |
11 |
taactttaactatagtggtgttcttccataaaaagtatcttcataacttaaaaa-gaaattcataagaatagggttatcaaaaactagaagcatgtgagg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22966763 |
taactttaactatagtggtgttcttccataaaaagtatcttcataacttaaaaaagaaattcataagaatagggttatcaaaaattagaagcatgtgagg |
22966862 |
T |
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| Q |
110 |
aaaaatttgtnnnnnnnntgtgcatagtaactaatagtagttgcgttgatcagttgacattgattctttaataggagatctataggtgttataagttata |
209 |
Q |
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| T |
22966863 |
aaaaatttgtaaaaaaa-tgtgcatagtaactaatagtagttgcgttgattagttgacattgattctttaatagga--tctaaaggtgttataagttata |
22966959 |
T |
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| Q |
210 |
gttagttgtgattagccttttgaaaggaattggtagctcagtatgttttttgtctggtgtctacaatgtggacatgagtcttttgtgagc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
22966960 |
gttagttgtgattagccttttgaaaggaattggtagctcggtatgttttttgtctggtgtgtacaatgaggacatgagtcttttgtgagc |
22967049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 256 - 470
Target Start/End: Complemental strand, 29207 - 28992
Alignment:
| Q |
256 |
tttttgtctggtgtctacaat--gtggacatgagtcttttgtgagccaaacttcggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgt |
353 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||| |
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| T |
29207 |
tttttgtctggtgtgtacaatatgtggacatgagtcttttgtgagccaaacttcagcatcttatatccttatcctctcctcaatgcctggtgtaagttgt |
29108 |
T |
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| Q |
354 |
gctttatgaatcttggttgtgttatgtgtacattctttttctacaagaaccatgtggtcaattgagttgtattaagttattgtcattcttttcttattta |
453 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
29107 |
gctttctgaatcttggttgtgctatgtggacattctttttctataagaaccatgtggtcaattgagttgtattaa-ttgttgtcattattttcttatttg |
29009 |
T |
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| Q |
454 |
aaatcaatgttatattg |
470 |
Q |
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||||||||||||||||| |
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| T |
29008 |
aaatcaatgttatattg |
28992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 256 - 470
Target Start/End: Original strand, 29156662 - 29156877
Alignment:
| Q |
256 |
tttttgtctggtgtctacaat--gtggacatgagtcttttgtgagccaaacttcggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgt |
353 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||| |
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| T |
29156662 |
tttttgtctggtgtgtacaatatgtggacatgagtcttttgcgagccaaacttcagcatcttatatcctgatcctctcctcaatgcctggtgtaagttgt |
29156761 |
T |
|
| Q |
354 |
gctttatgaatcttggttgtgttatgtgtacattctttttctacaagaaccatgtggtcaattgagttgtattaagttattgtcattcttttcttattta |
453 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
29156762 |
gctttctgaatcttggttgtgctatgtggacattctttttctataagaaccatgtggtcaattgagttgtattaa-ttgttgtcattattttcttatttg |
29156860 |
T |
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| Q |
454 |
aaatcaatgttatattg |
470 |
Q |
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||||||||||||||||| |
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| T |
29156861 |
aaatcaatgttatattg |
29156877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 106311 - 106205
Alignment:
| Q |
273 |
caatgtggacatgagtcttttgtgagccaaacttcggcatcctatatcctcatcctctcctcaatgcttggtgtaagttgtgctttatgaatcttggttg |
372 |
Q |
| |
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||||||||||||||||||||||| || |||| | || |||||| ||| |||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
106311 |
caatgtggacatgagtcttttgtaagtcaaatgttggtgtcctat--ccttatcctctcctcataatctggtgtaagttgttctttgtgaatcttggttg |
106214 |
T |
|
| Q |
373 |
tgttatgtg |
381 |
Q |
| |
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|| |||||| |
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| T |
106213 |
tgctatgtg |
106205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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