View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_23 (Length: 472)
Name: NF11853_low_23
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 37810871 - 37810413
Alignment:
| Q |
14 |
caaaggtcaagatgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcg |
113 |
Q |
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| T |
37810871 |
caaaggtcaagatgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgccgagcg |
37810772 |
T |
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| Q |
114 |
tgggcaggctcacatagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattg |
213 |
Q |
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| T |
37810771 |
tgagcaggctcacatagataggaatattgcacacaagcttactcctgctgagctgcgtgagaagaaggaaaggaagttgtttgatgacccaaatacattg |
37810672 |
T |
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| Q |
214 |
gacacacttgtctcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtg |
313 |
Q |
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| T |
37810671 |
gacacacttgtctcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtg |
37810572 |
T |
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| Q |
314 |
cggtgattcgtgatggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtga |
413 |
Q |
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| T |
37810571 |
cggtgatttgtgatggtattagcgttgtcgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggcgtga |
37810472 |
T |
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| Q |
414 |
tgtttcaaaagagatagaagataatgaagattcaggctatgcctataaatgtgttctgg |
472 |
Q |
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| T |
37810471 |
tgtttcaaaagagaaagaagataatgaagattcaggcgatgccaataaatgtgttctgg |
37810413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 52352740 - 52352306
Alignment:
| Q |
14 |
caaaggtcaagatgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52352740 |
caaaggtcaagatgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgctgctgctgagcg |
52352641 |
T |
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| Q |
114 |
tgggcaggctcacatagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattg |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||| |
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| T |
52352640 |
tgagcaggctcacatagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaagaaaggaagctctttgatgacccaaattcattg |
52352541 |
T |
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| Q |
214 |
gacacacttgtctcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtg |
313 |
Q |
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| T |
52352540 |
gacacacttgtctcactttacagggtaaatgacctctctcatcccaaggcccgctttagagttgatgttaatgctcaagaaaatcgtttgactggatgtg |
52352441 |
T |
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| Q |
314 |
cggtgattcgtgatggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtga |
413 |
Q |
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| T |
52352440 |
ctgtgatttgtgatggtattagcgttgttgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgcatcaattggagcga |
52352341 |
T |
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| Q |
414 |
tgtttcaaaagagatagaagataatgaagattcag |
448 |
Q |
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| T |
52352340 |
tgtttcaaaagagaaagaagatgatgaggattcag |
52352306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 17199574 - 17199198
Alignment:
| Q |
14 |
caaaggtcaagatgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcg |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17199574 |
caaagatcaagatgagtaatttacataaggtactagggacagaagcgactcaagatcccacccggcttgaaaaggaagtacgtaatgcaactgctgagcg |
17199475 |
T |
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| Q |
114 |
tgggcaggctcacatagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattg |
213 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||| |
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| T |
17199474 |
tgagcaggctcacatagataggaatattgcacgcaagcttactcctgctgagctgcgcgagaagaagaaaaggaaactgtttgatgagccaaatacattg |
17199375 |
T |
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| Q |
214 |
gacacacttgtctcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtg |
313 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17199374 |
gacacacttgtctcactttacagggtaaatggcctctctcatcccaatgcccgctttagagt---------tgctcaagaaaatcgtttgactggatgtg |
17199284 |
T |
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| Q |
314 |
cggtgattcgtgatggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtat |
401 |
Q |
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|||| ||| ||||||| |||||| |||| || ||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
17199283 |
cggtaatttgtgatggcattagcattgttgtggttgaaggtggaagcaagtcaattaagag--ataggaaacttatgcttagccgtat |
17199198 |
T |
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