View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_3 (Length: 920)
Name: NF11853_low_3
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 14 - 660
Target Start/End: Original strand, 12997704 - 12998349
Alignment:
| Q |
14 |
agcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgct |
113 |
Q |
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||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | |
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| T |
12997704 |
agcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtt |
12997802 |
T |
|
| Q |
114 |
tcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
213 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997803 |
tcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
12997902 |
T |
|
| Q |
214 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttct |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997903 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttct |
12998002 |
T |
|
| Q |
314 |
catactttatcgcctgctcatatagttctacaccaaatccaaacaaaacagaaaacaacaaaatcaattatacaatttcacattaattattgctaccaat |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998003 |
catactttatcgcctgctcatatagttctacaccaaatccaaacaaaacagaaaacaacaaaatcaattatacaatttcacattaattattgctaccaat |
12998102 |
T |
|
| Q |
414 |
tatattaaggtaagaaagtgacaattttttacattaactattgtcagatttatgatcgataactttattattatgttgcattatcagtcaactgttaaat |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
12998103 |
tatattaaggtaagaaagtgacaattttttacattaactattgtcagatttatgattgataactttattatcatgttgcattatctttcaactgttaaat |
12998202 |
T |
|
| Q |
514 |
gtatattaaataataatgactttgatcataaaacgacaagatttaaataactagcagtatttcaaataaatttgttagaaggtgacgttttaaaccattt |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998203 |
gtatattaaataataatgactttgatcataaaacgacaagatttaaataactagcaatatttcaaataaatttgttagaaggtgacgttttaaaccattt |
12998302 |
T |
|
| Q |
614 |
cgtacactacatgtacagaattgatgattataactataactatcatc |
660 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12998303 |
cgtacactacatgtacagaattgaagattataactataactatcatc |
12998349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 14 - 660
Target Start/End: Original strand, 13072344 - 13072989
Alignment:
| Q |
14 |
agcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgct |
113 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | |
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| T |
13072344 |
agcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtt |
13072442 |
T |
|
| Q |
114 |
tcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072443 |
tcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
13072542 |
T |
|
| Q |
214 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttct |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072543 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatgaatgatcctttct |
13072642 |
T |
|
| Q |
314 |
catactttatcgcctgctcatatagttctacaccaaatccaaacaaaacagaaaacaacaaaatcaattatacaatttcacattaattattgctaccaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072643 |
catactttatcgcctgctcatatagttctacaccaaatccaaacaaaacagaaaacaacaaaatcaattatacaatttcacattaattattgctaccaat |
13072742 |
T |
|
| Q |
414 |
tatattaaggtaagaaagtgacaattttttacattaactattgtcagatttatgatcgataactttattattatgttgcattatcagtcaactgttaaat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
13072743 |
tatattaaggtaagaaagtgacaattttttacattaactattgtcagatttatgattgataactttattatcatgttgcattatctttcaactgttaaat |
13072842 |
T |
|
| Q |
514 |
gtatattaaataataatgactttgatcataaaacgacaagatttaaataactagcagtatttcaaataaatttgttagaaggtgacgttttaaaccattt |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072843 |
gtatattaaataataatgactttgatcataaaacgacaagatttaaataactagcaatatttcaaataaatttgttagaaggtgacgttttaaaccattt |
13072942 |
T |
|
| Q |
614 |
cgtacactacatgtacagaattgatgattataactataactatcatc |
660 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13072943 |
cgtacactacatgtacagaattgaagattataactataactatcatc |
13072989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 716 - 903
Target Start/End: Original strand, 12998405 - 12998592
Alignment:
| Q |
716 |
ttaactaagggaggtttagaaatgaagtgagtatagtaccagctggggagagattgtagagaacatgtgtaaatttcaaagcactgtcactaacagcaat |
815 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998405 |
ttaactaagggaggtttagaaatgaaatgagtatagtaccagctggggagagattgtagagaacatgtgtaaatttcaaagcactgtcactaacagcaat |
12998504 |
T |
|
| Q |
816 |
ggttggagtaggaacatgatggtggtgaacatggtcaaccttctggttcttggctggatctcccttcaccacctttggtccagtttct |
903 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998505 |
ggttggagtaggaacatgatggtggtgaacatggtcaaccttctggttcttggctggatctcccttcaccacctttggtccagtttct |
12998592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 716 - 903
Target Start/End: Original strand, 13073045 - 13073232
Alignment:
| Q |
716 |
ttaactaagggaggtttagaaatgaagtgagtatagtaccagctggggagagattgtagagaacatgtgtaaatttcaaagcactgtcactaacagcaat |
815 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073045 |
ttaactaagggaggtttagaaatgaaatgagtatagtaccagctggggagagattgtagagaacatgtgtaaatttcaaagcactgtcactaacagcaat |
13073144 |
T |
|
| Q |
816 |
ggttggagtaggaacatgatggtggtgaacatggtcaaccttctggttcttggctggatctcccttcaccacctttggtccagtttct |
903 |
Q |
| |
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| T |
13073145 |
ggttggagtaggaacatgatggtggtgaacatggtcaaccttctggttcttggctggatctcccttcaccacctttggtccagtttct |
13073232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 28139031 - 28139193
Alignment:
| Q |
180 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
279 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| | | |||||| || |||||||| ||||| ||| | || || |||||||| || |||||||| ||| |
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| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
|
| Q |
280 |
attgctccattggaagtgatgaatgatcctttctcatactttatcgcctgctcatatagttct |
342 |
Q |
| |
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| |||||| | ||||| ||||| ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
28139131 |
aatgctccggttgaagttatgaacgatcctttctcatactttatcgcttgctcataaagttct |
28139193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 763 - 818
Target Start/End: Original strand, 28139913 - 28139968
Alignment:
| Q |
763 |
gagagattgtagagaacatgtgtaaatttcaaagcactgtcactaacagcaatggt |
818 |
Q |
| |
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|||||||||||||||||||| ||||| || | | ||||||||||||||||||||| |
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|
| T |
28139913 |
gagagattgtagagaacatgagtaaacttgagggaactgtcactaacagcaatggt |
28139968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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