View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_30 (Length: 372)
Name: NF11853_low_30
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31715176 - 31714964
Alignment:
| Q |
1 |
atgaagaaaatcagatgaattcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagccatcttt |
100 |
Q |
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| T |
31715176 |
atgaagaaaatctgatgatttcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagccatcttt |
31715077 |
T |
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| Q |
101 |
cgc----------gtaccgcctttcaacaacaacatctgcccattggatttcaaagtctaacacacattggtgtgcttttgtaattgataataagactct |
190 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31715076 |
cgcacacatgtttgtaccgcctttcaacaacaacgtctgcccattggatttcaaagtctaa-----------gtgcttttgtaattgataataagactct |
31714988 |
T |
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| Q |
191 |
tcacatttcttgcttgattaagag |
214 |
Q |
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|||||||||||||||||||||||| |
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| T |
31714987 |
tcacatttcttgcttgattaagag |
31714964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 31714907 - 31714825
Alignment:
| Q |
271 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaataccttttaagatataagtgt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31714907 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaatacc-tttaagatataagtgt |
31714825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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