View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_34 (Length: 336)
Name: NF11853_low_34
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 32290103 - 32290417
Alignment:
| Q |
19 |
gttagaccaatgattaatttggtggtagtattttatatttctagctagtgtatggtgttgtttttgcatgattacttagtagacaatagacattgcaaaa |
118 |
Q |
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| T |
32290103 |
gttagaccaatgattaatttggtggtagtattttatatttctagctagtgtatggttttgtttttgcatgattacttagtagacaatagacattgcaaaa |
32290202 |
T |
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| Q |
119 |
aggtattacaagcaagcacaatcaatgagctaatgtttctggcaggggtagctagctaagctagatccttgcttgtgttcaagaccaggagta------- |
211 |
Q |
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| T |
32290203 |
aggtattacaagcaagcacaatcaatgagctaatgtttctggcaggggtagctagctaagctagatccttgcttgtgttcaagaccaggagtatattcac |
32290302 |
T |
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| Q |
212 |
--taacatatttggtgtgaattttatatttatttataactcacatatatctcnnnnnnnnnnnnccacttaaaatctagtttctatttatctcattgtca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32290303 |
actaacatatttggtgtgaattttatatttatttataactcacatatatctcattttttt-----cacttaaaatctagtttctatttatctcattgtca |
32290397 |
T |
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| Q |
310 |
actctattatctgtgctcct |
329 |
Q |
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| ||||||||| ||| |||| |
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| T |
32290398 |
agtctattatcagtgatcct |
32290417 |
T |
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