View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_35 (Length: 327)
Name: NF11853_low_35
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 32547910 - 32547626
Alignment:
| Q |
23 |
cagagagttttcaaactaggaaatgatgatgcttcactttcatcctttatatttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaat |
122 |
Q |
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| T |
32547910 |
cagagagttttcaaactaggaaatgatgatgcttcacttccatcctttatatttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaat |
32547811 |
T |
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| Q |
123 |
tttgaagcttaccgaagacatcaagttgtatagtaccattgaacttgtttttggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacatagg |
222 |
Q |
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| T |
32547810 |
tttgaagcttaccaaagacatcaagttgtatagtaccattgaacttgtttttggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacatagg |
32547711 |
T |
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| Q |
223 |
aatagacccttcaaaattgtttccgcttaaatcaagcatctctaataatgacatagaagcattaggaaattcttctaacacccct |
307 |
Q |
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| T |
32547710 |
aatagacccttcaaaattgtttccacttaaatcaagcatctctaataatgacatagaagcattaggaaattcttctaacacccct |
32547626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 297
Target Start/End: Complemental strand, 14558483 - 14558260
Alignment:
| Q |
75 |
ttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaattttgaagcttaccgaagacatcaagttgtatagtaccattgaacttgttttt |
174 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||| |||||||| ||| | || | ||||||| ||||| ||| ||||||||||||||| |
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| T |
14558483 |
ttgcatcaacaaacaagttgttatgtgcaagatcaagtgtacccaaattttgtagccttccaatcacatcaaactgtattgtaacattgaacttgtttta |
14558384 |
T |
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| Q |
175 |
ggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacataggaatagacccttcaaaattgtttccgcttaaatcaagcatctctaataatgac |
274 |
Q |
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| T |
14558383 |
ggaaagttgaagcaaaaggagtcttttgagtttgaagatagacataggaataggcccttcaaaattgttgccacttaaatcaaccatctctaatgatgac |
14558284 |
T |
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| Q |
275 |
-atagaagcattaggaaattcttc |
297 |
Q |
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| T |
14558283 |
taaagaagcatttggaatttcttc |
14558260 |
T |
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