View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11853_low_36 (Length: 323)

Name: NF11853_low_36
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11853_low_36
NF11853_low_36
[»] chr2 (1 HSPs)
chr2 (14-308)||(38547652-38547946)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 38547652 - 38547946
Alignment:
Q  14 agactaaaagtgaaccaaaaatcacacttataacaaaagccttagatttatatatgaatttctttggattcacatatgtaggcaaatttttagtattcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38547652 agactaaaagtgaaccaaaaatcacacttataacaaaagccttagatttatatatgaatttctttggattcacatatgtaggcaaatttttagtattcaa 38547751  T
Q  114 agcatcaccaatcgaaaaattcgaatgactaaaactccaagctaaaattctacaagtatcaaccattctcccagtcgatcccgaaaatccaacatacatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38547752 agcatcaccaatcgaaaaattcgaatgactaaaactccaagctaaaattctacaagtatcaaccattctcccagtcgatcccgaaaatccaacatacatt 38547851  T
Q  214 tcatccacaaaaaccctagaaaaattaataggcttgcttatcaaaggcctattaggttttcttttccccgccggagccatggtaacattaatttc 308  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38547852 tcatccacaaaaaccctagaaaaattaataggcttgctaatcaaaggcctattaggttttcttttccccgccggagccatagtaacattaatttc 38547946  T

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