View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_39 (Length: 255)
Name: NF11853_low_39
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 9120491 - 9120393
Alignment:
| Q |
148 |
aattggagttgaagttttcaatgaagaaaccatttgaggtaaacccatagcctttaacctcgctttgttttctgcaattctctctagtctctgcttctc |
246 |
Q |
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| T |
9120491 |
aattggagttgaagttttcaaggaagaaaccatttgaggtaaacccatagcctttaacctcgctttgttttctgcaattctctctagtctttgtttctc |
9120393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 9120623 - 9120551
Alignment:
| Q |
19 |
atcatgttcatgttgttcactagaagaatcagattcatcatgttcttgttcttcctcattttggggtatatac |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9120623 |
atcatgttcatgttgttcactagaagaatcagattcatcacgttcttgttcttcctcattttggggtatatac |
9120551 |
T |
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