View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_4 (Length: 868)
Name: NF11853_low_4
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 764; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 1 - 850
Target Start/End: Complemental strand, 50595068 - 50594222
Alignment:
| Q |
1 |
gcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccact-gttttcaccaaccacttccaattaacacataaaaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50595068 |
gcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccacttgttttcaccaaccacttccaattaacacataaaaat |
50594969 |
T |
|
| Q |
100 |
tatcactaatactcataaccacaagactcttaccacataactaatactattattttaacattaaccatgactacaagcnnnnnnntttcatatactatat |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
50594968 |
tatcactaatactcataaccacaagactcttaccacacaactaatactattattttaacattaaccatgactacaggcaaaaaaaattcatatgctat-- |
50594871 |
T |
|
| Q |
200 |
taagtaattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaatacaaacatgatttttaactc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50594870 |
taagtaattaagtaatacattgttcataacatggataaatccacttatttat--ttagatttttaattaagtgatacaatacaaacatgatttttaactc |
50594773 |
T |
|
| Q |
300 |
tcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccagatag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
50594772 |
tcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccacatag |
50594673 |
T |
|
| Q |
400 |
agacactcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggcttcattgctttggttgcttcca |
499 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50594672 |
agacactcttttgcttctctccacaatgccttataaaatggtgtatcgtcaaattggtaatactcacccaatataggcttcattgctttggttgcttcca |
50594573 |
T |
|
| Q |
500 |
tcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagtatcagtgatgtgatgaaacactttgtttaaaatcccataatctctatccac |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
50594572 |
tcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagtatcagtgatgtgatgaaacactttgattaaaatcccataatctctatccac |
50594473 |
T |
|
| Q |
600 |
agttgccaaagctcctcttaaccaatcccattcttttgaatcataatgaggcaaagaaaaatgtgtatgctgcaaataagttattgttacaagaaaacca |
699 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50594472 |
agttgccaaagctcctctcaaccaatcccattcttttgaatcataatgaggcaaagaaaaatgtgtatgctgcaaataagttattgttacaagaaaacca |
50594373 |
T |
|
| Q |
700 |
ttcacaataagcaatggcacaaaatacacacatatcaaccaaacaaacccttttaaagatgcaataaagtagagcaaataagtagcagctaaaacagctg |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594372 |
ttcacaataagcaatggcacaaaatacacacatatcaaccaaacaaacccttttaaagatgcaataaagtagagcaaataagtagcagctaaaacagctg |
50594273 |
T |
|
| Q |
800 |
caatagaaacaaaaacttgaagtctttccctcttagaatatattggagcat |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50594272 |
caatagaaacaaaaacttgaagtctttccctcttagaatatattggagcat |
50594222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 446 - 655
Target Start/End: Complemental strand, 23031847 - 23031638
Alignment:
| Q |
446 |
catcaaattggtaatactcacccaatataggcttcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatg |
545 |
Q |
| |
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||||||| || ||||| |||||||| ||||| |||| ||||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||| ||||||| |
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|
| T |
23031847 |
catcaaaatgataatattcacccaaaataggtttcacacctttggtagcttccattgcatgataatgaggcatagttgaaaacatatgatgaaccacatg |
23031748 |
T |
|
| Q |
546 |
agtatcagtgatgtgatgaaacactttgtttaaaatcccataatctctatccacagttgccaaagctcctcttaaccaatcccattcttttgaatcataa |
645 |
Q |
| |
|
||||||||| |||| |||||| ||||| || | ||| ||||||||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||| |
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|
| T |
23031747 |
agtatcagttatgttatgaaaaactttattaagaattccataatctctatccacagttgccaaagcacctctcatccaatcccattcagtagaatcataa |
23031648 |
T |
|
| Q |
646 |
tgaggcaaag |
655 |
Q |
| |
|
|||||||||| |
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|
| T |
23031647 |
tgaggcaaag |
23031638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 205 - 480
Target Start/End: Complemental strand, 1897455 - 1897191
Alignment:
| Q |
205 |
aattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaatacaa-acatgatttttaactctcac |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||| | ||| | | |||||||||||||||| ||| |||||| || |||||| |
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|
| T |
1897455 |
aatttagtaatacattgttcataacatggacaaatccacttattta------gctttttgaccaagtgatacaatacaagacaagattttcaagtctcac |
1897362 |
T |
|
| Q |
304 |
tttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccagatagagac |
403 |
Q |
| |
|
| ||| | | |||||| |||| ||||||||||||||||| || |||||||| | ||||||||||||||| ||||||| |||| | |||||||| |
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|
| T |
1897361 |
atcatgattc---atgcatacttt---attcatcaaaacttgttcatggaccaataattaaccttttgagatgttctttcatctggctcaacatagagac |
1897268 |
T |
|
| Q |
404 |
actcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggcttc |
480 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
1897267 |
actcttttgcttttctccacaatgccttggaaaattatgtatcatcaaattggtaatactcacccagtatagacttc |
1897191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 630 - 798
Target Start/End: Complemental strand, 1897193 - 1897024
Alignment:
| Q |
630 |
ttcttttgaatcataatgaggcaaagaaaaatgtgtatgctgcaaa-taagttattgttacaagaaaaccattcacaataagcaatggcacaaaatacac |
728 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||| |||||| | ||||||| ||||||||||| ||||| |||||| |||| |||||||||| | |
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|
| T |
1897193 |
ttcttttgaatcataatgaggcaaagaatagcgtgcatgttgcaaaattagttattcatacaagaaaacaattcagaataagtaatgccacaaaatactc |
1897094 |
T |
|
| Q |
729 |
acatatcaaccaaacaaacccttttaaagatgcaataaagtagagcaaataagtagcagctaaaacagct |
798 |
Q |
| |
|
||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
1897093 |
acatatcaaccaagcaagccctttcaaatatgcaataaagtagagcaaataagtagcagttagaacagct |
1897024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 379 - 629
Target Start/End: Complemental strand, 37020750 - 37020500
Alignment:
| Q |
379 |
ccttcatcttgctccagatagagacactcttttgcttctctccacaatgccttataaaatggtgtatcatcaaattggtaatactcacccaatataggct |
478 |
Q |
| |
|
|||| |||| |||| | ||||| ||||||| | ||||||||||| ||||||| ||||||||||| ||||| || | ||||| || ||||| || || | |
|
|
| T |
37020750 |
ccttgatctggctcgacatagatacactctctagcttctctccataatgcctggtaaaatggtgtttcatccaaccgataataatctcccaaaattggtt |
37020651 |
T |
|
| Q |
479 |
tcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatgagtatcagtgatgtgatgaaacactttgtttaa |
578 |
Q |
| |
|
| ||||| ||||| || ||||| ||||| ||||| ||||||||||| || | ||||| ||||||||||| || || || | || || || ||||| | |
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|
| T |
37020650 |
taattgccttggtagcctccattgcatgataatgaggcattgtggagaacaagtgatgtgccacatgagtgtctgtaatattgtggaagaccttgttcag |
37020551 |
T |
|
| Q |
579 |
aatcccataatctctatccacagttgccaaagctcctcttaaccaatccca |
629 |
Q |
| |
|
|| |||||||| || || |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
37020550 |
gattccataatccctgtcaacagttgctaaagctcctctcaaccagtccca |
37020500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 763
Target Start/End: Original strand, 29458791 - 29458891
Alignment:
| Q |
665 |
tatgctgcaaataagttattgttacaagaaaaccattcacaataagca--atggcacaaaatacacacatatcaaccaaacaaacccttttaaagatgca |
762 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| |||| |||| || |||||||||| ||||||||| || | ||| |||||| |||| |||| |
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|
| T |
29458791 |
tatgctgcaaataagttattgttagaagatatccatttacaacgagcaatatagcacaaaataaccacatatcagcctatcaagccctttcaaagttgca |
29458890 |
T |
|
| Q |
763 |
a |
763 |
Q |
| |
|
| |
|
|
| T |
29458891 |
a |
29458891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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