View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_43 (Length: 243)
Name: NF11853_low_43
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9836998 - 9836773
Alignment:
| Q |
1 |
catcattatacaggtggaggtggcaagtctagcaaaagccagaagccaatacaatcttcagaatctaactcatcttggattgctaggaaatgtaaacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836998 |
catcattatacaggtggaggtggcaagtctagcaaaagccagaagccaatacaatcttcagaatctaactcatcttggattgctaggaaatgtaaacctc |
9836899 |
T |
|
| Q |
101 |
cagaagctttcttagctgcttcccaagcttcagcttctttagttgaggtaggacttttcttataggtcgcatatacataccgagtcgaaattccaactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836898 |
cagaagctttcttagctgcttcccaagcttcagcttctttagttgaggtaggacttttcttataggtcgcatatacataccgagtcgaaattccaactga |
9836799 |
T |
|
| Q |
201 |
aagagtcaggttagagcgagcagtgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9836798 |
aagagtcaggttagagcgagcagtgt |
9836773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9847876 - 9847651
Alignment:
| Q |
1 |
catcattatacaggtggaggtggcaagtctagcaaaagccagaagccaatacaatcttcagaatctaactcatcttggattgctaggaaatgtaaacctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847876 |
catcattatacaggtggaggtggcaagtctagcaaaagccagaagccaatacaatcttcagaatctaactcatcttggattgctaggaaatgtaaacctc |
9847777 |
T |
|
| Q |
101 |
cagaagctttcttagctgcttcccaagcttcagcttctttagttgaggtaggacttttcttataggtcgcatatacataccgagtcgaaattccaactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847776 |
cagaagctttcttagctgcttcccaagcttcagcttctttagttgaggtaggacttttcttataggtcgcatatacataccgagtcgaaattccaactga |
9847677 |
T |
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| Q |
201 |
aagagtcaggttagagcgagcagtgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9847676 |
aagagtcaggttagagcgagcagtgt |
9847651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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