View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11853_low_52 (Length: 232)

Name: NF11853_low_52
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11853_low_52
NF11853_low_52
[»] chr4 (3 HSPs)
chr4 (7-213)||(53328627-53328833)
chr4 (7-200)||(22898466-22898659)
chr4 (7-200)||(22950134-22950327)
[»] chr7 (2 HSPs)
chr7 (7-204)||(39954917-39955114)
chr7 (7-137)||(10575300-10575430)
[»] chr2 (1 HSPs)
chr2 (7-200)||(41027485-41027678)
[»] chr5 (1 HSPs)
chr5 (7-206)||(26358618-26358817)
[»] chr3 (7 HSPs)
chr3 (40-200)||(24919962-24920122)
chr3 (34-200)||(24923536-24923702)
chr3 (7-203)||(21584670-21584866)
chr3 (34-200)||(24497335-24497501)
chr3 (34-200)||(25084978-25085144)
chr3 (7-200)||(31825633-31825826)
chr3 (40-200)||(24981992-24982152)
[»] chr8 (1 HSPs)
chr8 (7-140)||(14261168-14261301)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 53328627 - 53328833
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53328627 ggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcgcaagacgtggtggtgtga 53328726  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  53328727 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcg 53328826  T
Q  207 ccgtaag 213  Q
    |||||||    
T  53328827 ccgtaag 53328833  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 22898466 - 22898659
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| ||  |  | || || ||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22898565  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || || ||||| |||||    
T  22898566 agcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagca 22898659  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 22950134 - 22950327
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| ||  |  | || || ||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22950233  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || || ||||| |||||    
T  22950234 agcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagca 22950327  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 39955114 - 39954917
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||||||||||||  | ||| | ||||| ||||| || ||||||||||| || || |||||||| ||||||||||| ||||| |||||||||||||    
T  39955114 ggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttgcaaggcgtggtggtgtga 39955015  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgct 204  Q
    || | ||||| ||  | ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||    
T  39955014 agagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgct 39954917  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 10575300 - 10575430
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||| || |||||  |||| || ||||| || ||||| ||||||||||||||||||||||| || ||||||||  | || ||| | || |||||||    
T  10575300 ggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtga 10575399  T
Q  107 agcgtatcagtggcttaatctatgaagaaac 137  Q
    |  | |||||||| || |||||||| |||||    
T  10575400 aaagaatcagtggattgatctatgaggaaac 10575430  T

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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 41027485 - 41027678
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| | ||| |  | || || ||||    
T  41027485 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtga 41027584  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||||| || || || ||||| ||||| || ||||||||  | ||||||||| | |||||||| ||||||||||| || || |||||||||||    
T  41027585 agcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagca 41027678  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 26358817 - 26358618
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    |||||||| || ||||| || || || || || ||||| |||||||| || ||||| || || || || ||||||||||| ||||| ||||||||||| |    
T  26358817 ggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtcttgcaaggcgtggtggtgtaa 26358718  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcg 206  Q
    | |||||||||||  | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||| || ||||||||    
T  26358717 aacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcg 26358618  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 24920122 - 24919962
Alignment:
Q  40 cttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactc 139  Q
    ||||||||||||||||| || ||||| |||||||||||||||||  | |||||| | |||||||||||| | ||||| || || ||||||||||||||      
T  24920122 cttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaacca 24920023  T
Q  140 gtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    | || ||  | ||||||||  | |||||||| ||||||||||| || || ||||| |||||    
T  24920022 gaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagca 24919962  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 24923702 - 24923536
Alignment:
Q  34 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 133  Q
    ||||| ||||||||||||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || ||||||||||    
T  24923702 aaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaag 24923603  T
Q  134 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||  | || ||  | ||||||||  | |||||||| ||||||||||| || || ||||| |||||    
T  24923602 aaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagca 24923536  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 21584866 - 21584670
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    ||||||||||| |||||  ||||| | || || |||||||||||||| || |||||||| ||||| || ||||||||  | || ||| | |||||||| |    
T  21584866 ggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtta 21584767  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttg-agaatgtgattcgtgatgcagtcacctacacagagcatgc 203  Q
    || | |||||||| || || ||||| |||||  | || ||||| ||||| ||||||| ||||||||||||||||||| || || ||||| ||||||||    
T  21584766 agagaatcagtggtttgatttatgaggaaacaagaggagttcttaagat-tttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgc 21584670  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 24497501 - 24497335
Alignment:
Q  34 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 133  Q
    ||||| |||||||| |||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || ||||||||||    
T  24497501 aaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaag 24497402  T
Q  134 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||  | || ||  | ||||||||  | || |||||||| ||||||||||| || ||||| |||||    
T  24497401 aaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagca 24497335  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 25084978 - 25085144
Alignment:
Q  34 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 133  Q
    ||||| ||||||||||||||||| || ||||| |||||||| |||||| |  | || ||| | |||||||||||| | |||||||| || || |||||||    
T  25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaag 25085077  T
Q  134 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    ||||  | || ||  | ||||||||  | ||||||||||| ||||||||||| || ||||| |||||    
T  25085078 aaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagca 25085144  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 31825826 - 31825633
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    ||||||||||| |||||| | ||| | || || || || || |||||||| || ||||| |||||||| ||||||||  | || ||| | ||||||||||    
T  31825826 ggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtga 31825727  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    || | |||||||| || ||||||||||||||| | || ||  | ||||||||  | |||||||| || |||||||| ||||| ||||| |||||    
T  31825726 agaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagca 31825633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 200
Target Start/End: Original strand, 24981992 - 24982152
Alignment:
Q  40 cttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactc 139  Q
    ||||||||||||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || || |||||||||||      
T  24981992 cttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaacca 24982091  T
Q  140 gtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 200  Q
    | || ||  | ||||||||  | |||||||| || ||||||||||| || ||||| |||||    
T  24982092 gaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagca 24982152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 14261301 - 14261168
Alignment:
Q  7 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 106  Q
    ||||||||||| |||||  |||| || || ||||||||||| ||||||||||||||||||||||| || ||||| ||  | || ||| | || |||||||    
T  14261301 ggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtga 14261202  T
Q  107 agcgtatcagtggcttaatctatgaagaaactcg 140  Q
    || | ||||| || || || ||||||||||||||    
T  14261201 agagaatcagcgggttgatttatgaagaaactcg 14261168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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