View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_53 (Length: 228)
Name: NF11853_low_53
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27355278 - 27355057
Alignment:
| Q |
1 |
catattaaattgaacatataaagatttcaagagctcaaatgaaagtattaggatagtcataacaggcatatacttggttttcacgttgttttcttacaaa |
100 |
Q |
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| T |
27355278 |
catattaaattgaacatataaagatttcaagagctcaaatgaaagtattaggatagtcataacaggcatatacttggttttcacgttgttttcttacaaa |
27355179 |
T |
|
| Q |
101 |
atcactctaatgcttccacgtttgtgaaaacacggcaactttgtcatgttccccttctcataaaccccagaatttattgaagacgtgttctttgaaaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27355178 |
atcattctaatgcttccacgtttgtgaaaacacggcaactttgtcatgttcctcttctcataaaccccagaatttattgaagacgtgttctttgaaaatt |
27355079 |
T |
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| Q |
201 |
aaatgcgatagaccaaccaaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
27355078 |
aaatgcgatagaccaaccaaaa |
27355057 |
T |
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