View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11853_low_54 (Length: 226)

Name: NF11853_low_54
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11853_low_54
NF11853_low_54
[»] chr7 (3 HSPs)
chr7 (1-219)||(39954743-39954961)
chr7 (19-124)||(10575471-10575576)
chr7 (5-77)||(354475-354547)
[»] chr4 (3 HSPs)
chr4 (1-125)||(53328780-53328904)
chr4 (4-101)||(22898622-22898719)
chr4 (4-101)||(22950290-22950387)
[»] chr3 (7 HSPs)
chr3 (4-124)||(24982115-24982235)
chr3 (4-101)||(21584613-21584710)
chr3 (4-124)||(24919879-24919999)
chr3 (4-116)||(25085107-25085219)
chr3 (4-124)||(31825550-31825670)
chr3 (4-110)||(24923467-24923573)
chr3 (7-116)||(24497260-24497369)
[»] chr5 (1 HSPs)
chr5 (1-125)||(26358540-26358664)
[»] chr2 (1 HSPs)
chr2 (4-107)||(41027641-41027744)
[»] chr8 (1 HSPs)
chr8 (4-124)||(14261025-14261145)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39954961 - 39954743
Alignment:
Q  1 cttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954961 cttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaa 39954862  T
Q  101 ggactctctacggtttcggtggttaaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954861 ggactctctacggtttcggtggttaaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctgg 39954762  T
Q  201 ttgaatgcttagttctgtg 219  Q
    ||||||||||||| |||||    
T  39954761 ttgaatgcttagtcctgtg 39954743  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 10575471 - 10575576
Alignment:
Q  19 gatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcg 118  Q
    |||||||||||||||||||||||||| |||||||||||||| || || ||||||||||| || || || ||||| || ||||| || ||||| |||||||    
T  10575471 gatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcg 10575570  T
Q  119 gtggtt 124  Q
    ||||||    
T  10575571 gtggtt 10575576  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 354475 - 354547
Alignment:
Q  5 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 77  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||| ||| | || || |||||||||||    
T  354475 agaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 53328780 - 53328904
Alignment:
Q  1 cttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaa 100  Q
    |||||||||||||||||||||||||| || ||||| ||||||||| |  | || |||||||| || ||||||||||| || |||||||||||||||||||    
T  53328780 cttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaa 53328879  T
Q  101 ggactctctacggtttcggtggtta 125  Q
    ||||||| ||||||||||| |||||    
T  53328880 ggactctttacggtttcgggggtta 53328904  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 22898622 - 22898719
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 101  Q
    |||||||||||| | |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22898622 gagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 22950290 - 22950387
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 101  Q
    |||||||||||| | |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22950290 gagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 24982115 - 24982235
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| |    
T  24982115 gagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaa 24982214  T
Q  104 ctctctacggtttcggtggtt 124  Q
    | ||||| |||||||||||||    
T  24982215 ccctctatggtttcggtggtt 24982235  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 21584710 - 21584613
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 101  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||| |||||| | |||||||| |||||    
T  21584710 gagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 24919999 - 24919879
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||| |||||||||||||| || ||||||||||| ||||||||||| || || || ||||||||||| || |||||| | |||||||||||||| |    
T  24919999 gagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaa 24919900  T
Q  104 ctctctacggtttcggtggtt 124  Q
    | ||||| || ||||| ||||    
T  24919899 ccctctatggattcggaggtt 24919879  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 25085107 - 25085219
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    ||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| |||||||| |    
T  25085107 gagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaa 25085206  T
Q  104 ctctctacggttt 116  Q
    | ||||| |||||    
T  25085207 ccctctatggttt 25085219  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 31825670 - 31825550
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||| || |||||||| || || ||||||||||| ||||||||||| || |||||||| ||||||||||| |||||| | |||||||||||||| |    
T  31825670 gagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaa 31825571  T
Q  104 ctctctacggtttcggtggtt 124  Q
    | ||||| || ||||| ||||    
T  31825570 ccctctatggattcggaggtt 31825550  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 24923573 - 24923467
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||| |||||||||||||| || ||||||||||| || |||||||| || || || |||||||||||||| |||||| | ||||| |||||||| |    
T  24923573 gagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaa 24923474  T
Q  104 ctctcta 110  Q
    | |||||    
T  24923473 ccctcta 24923467  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 24497369 - 24497260
Alignment:
Q  7 aatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactc 106  Q
    |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| || ||||| || |    
T  24497369 aatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccc 24497270  T
Q  107 tctacggttt 116  Q
    |||| |||||    
T  24497269 tctatggttt 24497260  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26358664 - 26358540
Alignment:
Q  1 cttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaa 100  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||| |  | ||||| ||||| || ||||||||||| ||||| ||||||||||| ||||    
T  26358664 cttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaa 26358565  T
Q  101 ggactctctacggtttcggtggtta 125  Q
    |||| || || ||||| || |||||    
T  26358564 ggaccctttatggttttgggggtta 26358540  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 41027641 - 41027744
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||| || ||||||||||| |||||  | ||||| || |||||||    
T  41027641 gagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaagga 41027740  T
Q  104 ctct 107  Q
    ||||    
T  41027741 ctct 41027744  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 14261145 - 14261025
Alignment:
Q  4 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 103  Q
    |||||||||||  | ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||||||||| |||||  | ||||| || |||||||    
T  14261145 gagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaagga 14261046  T
Q  104 ctctctacggtttcggtggtt 124  Q
    || | || |||||||| ||||    
T  14261045 ctttgtatggtttcggaggtt 14261025  T

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