View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_6 (Length: 794)
Name: NF11853_low_6
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 13 - 794
Target Start/End: Original strand, 6990089 - 6990910
Alignment:
| Q |
13 |
cagagaagtgagtgagaagaagggcctccactatttagtaaacccacggcaacttgagagtcagactcgacaagaattctttggcagcccttgtctaaag |
112 |
Q |
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| T |
6990089 |
cagagaagtgagtgagaagag----ctccactatttagtaaacccacggcaacttgagagtcagactcgacaagaattctttggcagcccttgtctaaag |
6990184 |
T |
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| Q |
113 |
ctaatttaacaccaatgaaaatagtgcaaaaatctgcgtgtgcaattgaacataacttcaagttggatgcgaacacacaaatgaatcaaccattatgatc |
212 |
Q |
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| T |
6990185 |
ctaatttaacaccaataaaaatagcgcaaaaatctgcgtgtgcaattgaacataacttcaagttggatgcaaacacacaaatgaatcaaccattatgatc |
6990284 |
T |
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| Q |
213 |
acacaacatgccacggcatgctgctctacctaactgttgaac------------aattaagcttaaaattatccaccgatggcggaatgcatgcgctgac |
300 |
Q |
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| T |
6990285 |
acacaacatgccacggcatgctgctctacctaaatgttgaaccacaagcatcacaattaagcttaaaattatccaccgatggcggaatgcatgcgctgac |
6990384 |
T |
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| Q |
301 |
acttagattattccgacgaataggaacattaagcaaatcattttgaaagttactcttcacctctaaagaaactcttggtgttattaataatttcttgagg |
400 |
Q |
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| T |
6990385 |
acttagattattccgacgagtaggaacattaagcaaataattttgaaagttactcttcacctctaaagaaactcttgatgttattaaaaatttcttgagg |
6990484 |
T |
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| Q |
401 |
tgattgaaagtttctttagaaaact-----------------gccataacatatccaatgtaataacaaattcagttttccaatgagaacttgcaacttc |
483 |
Q |
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| T |
6990485 |
tggttgaaactttctttagaaaactcaagagttttctagcatgccataacatatccaatgtaataacaaattcagttttccaatgagaacttgcaacttc |
6990584 |
T |
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| Q |
484 |
attgtcatcaactatgttctttataatccagtctttcattttcaattggttaacaatggcaaagaggcaggtacaagtttttcgaactagatcaatttct |
583 |
Q |
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| T |
6990585 |
attgtcatcaactatgttctttataatccagtctttcattttcaattggttaacaatggcaaagaggcaggtacaagtttttcgaaccagatcaatttct |
6990684 |
T |
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| Q |
584 |
ttttgccctagagtttc-ttcatataacttcactttctatccaaattaagcaaaggaagaacaagtttttact---------------tttctctcacaa |
667 |
Q |
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| T |
6990685 |
ttttgcctaagagtttctttcatataacttcactttctatccaaattaagcaaaggaagaacaagtttttacttttctctactttccctttctctcacaa |
6990784 |
T |
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| Q |
668 |
taactaaaaattcatcacactttggtctctttaacaagacatgttttcgagcttataacttatgtattataacctcatttaactaaaaacttgtttggta |
767 |
Q |
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| T |
6990785 |
taactaaaaattcatcacactttagtctctttaacaagacatattttcgagcttataacttatgtattataacctcatttaact-aaattttgtttggta |
6990883 |
T |
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| Q |
768 |
acagtcactttctcacaaacttataac |
794 |
Q |
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| T |
6990884 |
acagtcactttctcacaaacttataac |
6990910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 703 - 792
Target Start/End: Original strand, 31811995 - 31812087
Alignment:
| Q |
703 |
aagacatgttttcgagcttataacttatgtattataacctcatttaactaaaa---acttgtttggtaacagtcactttctcacaaacttata |
792 |
Q |
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| T |
31811995 |
aagacatgttttttagcttatagcttatgtcttataagctcatttgactaaaacagacccgtttggtaaccttcactttatcacaaacttata |
31812087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 703 - 794
Target Start/End: Original strand, 24925332 - 24925426
Alignment:
| Q |
703 |
aagacatgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcacaaacttataac |
794 |
Q |
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| T |
24925332 |
aagacatgattttgagtttataatttatatcttataaactcatttgactaaaaaaaccttgtttgataagagtcactttattacaaacttataac |
24925426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 783
Target Start/End: Complemental strand, 23051817 - 23051740
Alignment:
| Q |
709 |
tgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctcac |
783 |
Q |
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| T |
23051817 |
tgtttttgagcttatagtttatgtcttataagcccatttgactaaaaaggacctgtttggtaacagtcactttctcac |
23051740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 782
Target Start/End: Complemental strand, 20988976 - 20988892
Alignment:
| Q |
701 |
acaagacatgttttcgagcttataacttatgtattataacctcatttaactaaaaa---cttgtttggtaacagtcactttctca |
782 |
Q |
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| T |
20988976 |
acaagacacgttcttgcgcttataacttatgtcttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctca |
20988892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 756
Target Start/End: Complemental strand, 25727187 - 25727140
Alignment:
| Q |
709 |
tgttttcgagcttataacttatgtattataacctcatttaactaaaaa |
756 |
Q |
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| T |
25727187 |
tgtttttgagcttataacttatgttttataagctcatttgactaaaaa |
25727140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 792
Target Start/End: Original strand, 42139310 - 42139394
Alignment:
| Q |
711 |
ttttcgagcttataacttatgtattataacctcatttaactaaaaact---tgtttggtaacagtcactttctcacaaacttata |
792 |
Q |
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| T |
42139310 |
tttttgagcttaaagcttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttata |
42139394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 756
Target Start/End: Complemental strand, 44810018 - 44809969
Alignment:
| Q |
707 |
catgttttcgagcttataacttatgtattataacctcatttaactaaaaa |
756 |
Q |
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| T |
44810018 |
catgttttcgagcttatagcctatgtcttataagctcatttgactaaaaa |
44809969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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