View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_7 (Length: 669)
Name: NF11853_low_7
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 21 - 654
Target Start/End: Original strand, 33398902 - 33399534
Alignment:
| Q |
21 |
tatgcgtcgctgtccggctcgacaagccattcaaaaacctgtctactttgcaatactaataagaaagttctactttgttcaatgttagttttaagataac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33398902 |
tatgcgtcgctgtccggctcgacaagccattcaaaaacctgtctactttgcaatactaataagaaagttctactttgttcaatgttagttttaagataac |
33399001 |
T |
|
| Q |
121 |
tttatttaccataaatcatagtaacaccagtacacaattttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaaacc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33399002 |
tttatttaccataaatcatagtaacaccagtacacaattttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaa-cc |
33399100 |
T |
|
| Q |
221 |
ccattgtaagaaattcaggaagagctataagatcagatttgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399101 |
ccattgtaagaaattcaggaagagctataagatcagatttgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaa |
33399200 |
T |
|
| Q |
321 |
cataaagaaaataaataattaatgattttagtcactagaaaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcaga |
420 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399201 |
cataaagaaaataaataattaatgattttagtaactagaaaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcaga |
33399300 |
T |
|
| Q |
421 |
ttcctgtgaatcgttttgaatagcttcttttgcagcagggaccgtcggggagcggtccatggtgcatttgaaggcggtgctgcttgaggggccggtgtag |
520 |
Q |
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| T |
33399301 |
ttcctgtgaatcgttttgaatagctacttttgcagcagggaccggcggggagcggtccatggtgcatttgaaggtggtgctgcttgaggggccggtgtag |
33399400 |
T |
|
| Q |
521 |
gtgagggtacaggagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgaggg |
620 |
Q |
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| T |
33399401 |
gtgagggtacaggagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgaggg |
33399500 |
T |
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| Q |
621 |
cgagggcaccggagaccaagttaactctgatgtc |
654 |
Q |
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| T |
33399501 |
cgagggcaccggagaccaagttaactctgatgtc |
33399534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 398 - 654
Target Start/End: Original strand, 33395394 - 33395650
Alignment:
| Q |
398 |
tccaatctcaaacagttatcagattcctgtgaatcgttttgaatagcttcttttgcagcagggaccgtcggggagcggtccatggtgcatttgaaggcgg |
497 |
Q |
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||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
33395394 |
tccaatctcaaacagctatcaaatttctgtgaatcattttgaatagcttctttggcagtagggaccggcgggcagcggtccatggtgcatttgaaggcgg |
33395493 |
T |
|
| Q |
498 |
tgctgcttgaggggccggtgtaggtgagggtacaggagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggct |
597 |
Q |
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|||| ||| ||||| ||||||||||||||| || ||||||||| |||||||||||| |||| ||| |||| |||||||||||||||||| ||||| ||| |
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| T |
33395494 |
tgctacttcaggggacggtgtaggtgagggcaccggagaccaagttatctctgatgtctgcgcgccagcagcccatggtgcatttgaagacggtgctgct |
33395593 |
T |
|
| Q |
598 |
tcaggggctggtgtaggtgagggcgagggcaccggagaccaagttaactctgatgtc |
654 |
Q |
| |
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||| |||| |||||||||||||| ||||| ||||||||| |||||| ||||||||| |
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| T |
33395594 |
tcatgggccggtgtaggtgagggtgagggtaccggagacgaagttatttctgatgtc |
33395650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 477 - 626
Target Start/End: Original strand, 33399450 - 33399605
Alignment:
| Q |
477 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggt------acaggagaccaatttatctctgatgcctgcacgctagcaacc |
570 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||||| |||||||||||||| || ||||||||| ||| |||||||| ||||||||||||| || |
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| T |
33399450 |
ccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgagggcgagggcaccggagaccaagttaactctgatgtctgcacgctagcagcc |
33399549 |
T |
|
| Q |
571 |
catggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgagggcgaggg |
626 |
Q |
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| T |
33399550 |
catggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
33399605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 477 - 602
Target Start/End: Original strand, 33395566 - 33395697
Alignment:
| Q |
477 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtg------agggtacaggagaccaatttatctctgatgcctgcacgctagcaacc |
570 |
Q |
| |
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||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| |||||| || |||| ||||||| ||||||||||||| || |
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| T |
33395566 |
ccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgagggtaccggagacgaagttatttctgatgtctgcacgctagcagcc |
33395665 |
T |
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| Q |
571 |
catggtgcatttgaaggaggtgcggcttcagg |
602 |
Q |
| |
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||||| ||||||||||| ||||| |||||||| |
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| T |
33395666 |
catggcgcatttgaaggtggtgctgcttcagg |
33395697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 33394980 - 33395105
Alignment:
| Q |
83 |
gaaagttctactttgttcaatgttagttttaagataactttatttaccataaatcatagtaaca-ccagtacacaattttctttgatatcaaataattca |
181 |
Q |
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||||||||| ||||| |||| ||| ||||||||| | ||| ||||| |||||||||||| | ||| | ||||| |||||| |||| ||||||||| |
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| T |
33394980 |
gaaagttctgttttgtccaatattaattttaagatgattttgtttacattaaatcatagtagtatccattgcacaactttcttcgata--aaataattcc |
33395077 |
T |
|
| Q |
182 |
acatgattttattattggacaggaaaac |
209 |
Q |
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|||||||||||||||| ||| ||||||| |
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| T |
33395078 |
acatgattttattattagacgggaaaac |
33395105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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