View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_12 (Length: 660)
Name: NF11854_high_12
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 246 - 643
Target Start/End: Complemental strand, 31831580 - 31831183
Alignment:
| Q |
246 |
agggtgtcatgtaggagaaagggaggtataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831580 |
agggtgtcatgtaggagaaagggaggtataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatg |
31831481 |
T |
|
| Q |
346 |
tacatgctgcatccatcaaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatggtcaaag |
445 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831480 |
tacatgctgcatccatcaaagggtcaaaaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatggtcaaag |
31831381 |
T |
|
| Q |
446 |
tttgtcttttaaggttacaactagtgatggtcgtactgttgtttccaataatgttgctccagctggatggtcttttggtcaaacctacactggtgctcaa |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831380 |
tttgtcttttaaggttacaactagtgatggtcgtactgttgtttccaataatgttgctccagctggatggtcttttggtcaaacctacactggtgctcaa |
31831281 |
T |
|
| Q |
546 |
atcctctagagcaaggtcaaatccagtatcaagtttagaaatactactacacattttaagtattgtagtaaagattagtagtttagtacctcaatagt |
643 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31831280 |
atcctctagagcatggtcaaatccagtttcaagtttagaaatactactacacattttaagtattgtagtaaagattagtagtttagtacctcaatagt |
31831183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 41998023 - 41997846
Alignment:
| Q |
6 |
atcaatgggttctgcttcttatattggacatttggatttgagttataatcatttgtgtggtaagattcctgttggtgatccttttgatcatttggaagct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41998023 |
atcaatgggttctgcttcttatattggacatttggatttgagttataatcatttgtgtggtaagattcctgttggtgatccttttgatcatttggaagct |
41997924 |
T |
|
| Q |
106 |
tcttcttttgtttacaatgattgtctttgtgggaagccacttaaaccttgtggtgttaattaaacaaacttactcttc |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41997923 |
tcttcttttgtttacaatgattgtctttgtgggaagccacttaaaccttgtggtgttaattaaacaaacttactcttc |
41997846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 555
Target Start/End: Complemental strand, 18300680 - 18300386
Alignment:
| Q |
261 |
agaaagggaggtataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatgtacatgctgcatcca |
360 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||| || ||| | ||||| | |||||||| ||||||||||| ||||||||| | | | | | |
|
|
| T |
18300680 |
agaaggggaggaattaggttcacaatcaatggacattcttacttcaacttggttctagtaacaaatgtgggtggtgctggtgatgtacattcagtagcta |
18300581 |
T |
|
| Q |
361 |
tcaaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatggtcaaagtttgtcttttaaggt |
460 |
Q |
| |
|
| ||||| |||| | | || ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
18300580 |
ttaaaggatcaagatcagggtggatgcaaatgtctagaaattggggtcaaaattggcaaagcaacaattaccttaatggccaagctttgtctttcaaggt |
18300481 |
T |
|
| Q |
461 |
tacaactagtgatggtcgtactgttgtttccaataatgttgctccagctggatggtcttttggtcaaacctacactggtgctcaaatcctctaga |
555 |
Q |
| |
|
|||||| |||||||| || || ||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
18300480 |
tacaacaagtgatggcaaaacagtcatttccaacaatgttgctccatctggttggtcctttggtcaaacctacactggtgctcaattccgctaga |
18300386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 42966678 - 42966804
Alignment:
| Q |
319 |
tcacaaatgttggtggtgctggagatgtacatgctgcatccatcaaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggca |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||||| || ||||| ||||| ||| | ||||||| || |||||||| || |||||||| |
|
|
| T |
42966678 |
tcacaaatgttggtggagctggagatgtacattctgtgtccatcaagggatcaaagactggatggcaagctatgtctaggaactgggggcagaactggca |
42966777 |
T |
|
| Q |
419 |
gagcaacaattatctcaatggtcaaag |
445 |
Q |
| |
|
||||| || ||||||||||||||||| |
|
|
| T |
42966778 |
aagcaataactatctcaatggtcaaag |
42966804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 445
Target Start/End: Original strand, 42975100 - 42975226
Alignment:
| Q |
319 |
tcacaaatgttggtggtgctggagatgtacatgctgcatccatcaaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggca |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||||| || ||||| ||||| ||| | ||||||| || |||||||| || |||||||| |
|
|
| T |
42975100 |
tcacaaatgttggtggagctggagatgtacattctgtgtccatcaagggatcaaagactggatggcaagctatgtctaggaactgggggcagaactggca |
42975199 |
T |
|
| Q |
419 |
gagcaacaattatctcaatggtcaaag |
445 |
Q |
| |
|
||||| || ||||||||||||||||| |
|
|
| T |
42975200 |
aagcaataactatctcaatggtcaaag |
42975226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 263 - 439
Target Start/End: Complemental strand, 27476987 - 27476811
Alignment:
| Q |
263 |
aaagggaggtataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatgtacatgctgcatccatc |
362 |
Q |
| |
|
||||||||| |||||||||| || ||||| || ||||| || ||||||||| | |||| ||||| ||||||||||| ||||| ||| || ||||||| |
|
|
| T |
27476987 |
aaagggaggagtaaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggtgctggggatgttcattctatatccatc |
27476888 |
T |
|
| Q |
363 |
aaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatgg |
439 |
Q |
| |
|
||||| |||| |||||||||| | | ||||||||||| ||||| ||||| ||||| |||||| |||||| ||||| |
|
|
| T |
27476887 |
aaagggtcaagaactggttggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttatcttaatgg |
27476811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 263 - 439
Target Start/End: Complemental strand, 27488245 - 27488069
Alignment:
| Q |
263 |
aaagggaggtataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatgtacatgctgcatccatc |
362 |
Q |
| |
|
||||||||| |||||||||| || ||||| || ||||| || ||||||||| | |||| ||||| ||||| ||||| ||||| ||| || ||||||| |
|
|
| T |
27488245 |
aaagggaggagtaaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggagctggggatgttcattctatatccatc |
27488146 |
T |
|
| Q |
363 |
aaaggctcaaaaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatgg |
439 |
Q |
| |
|
||||| |||| |||||| ||| | | ||||||||||| ||||| ||||| ||||| |||||| |||||| ||||| |
|
|
| T |
27488145 |
aaagggtcaagaactggatggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttatcttaatgg |
27488069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University