View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_15 (Length: 637)

Name: NF11854_high_15
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_15
NF11854_high_15
[»] chr6 (6 HSPs)
chr6 (1-344)||(8148103-8148421)
chr6 (381-619)||(8148459-8148697)
chr6 (26-72)||(13815166-13815212)
chr6 (27-61)||(33076417-33076451)
chr6 (27-60)||(2493431-2493464)
chr6 (27-59)||(17168903-17168935)
[»] chr5 (3 HSPs)
chr5 (19-60)||(16881137-16881178)
chr5 (27-60)||(38749580-38749613)
chr5 (183-227)||(12478335-12478379)
[»] chr3 (4 HSPs)
chr3 (27-67)||(21110473-21110513)
chr3 (27-60)||(12704674-12704707)
chr3 (27-60)||(32166200-32166233)
chr3 (27-60)||(41319327-41319360)
[»] chr8 (5 HSPs)
chr8 (177-228)||(20154001-20154052)
chr8 (177-228)||(20203418-20203469)
chr8 (185-229)||(14229598-14229642)
chr8 (28-60)||(33049123-33049155)
chr8 (183-223)||(40152978-40153018)
[»] chr7 (2 HSPs)
chr7 (177-228)||(44287930-44287981)
chr7 (18-60)||(27980796-27980838)
[»] chr4 (5 HSPs)
chr4 (21-60)||(43093542-43093581)
chr4 (27-60)||(2976703-2976736)
chr4 (27-60)||(8457934-8457967)
chr4 (27-60)||(27096018-27096051)
chr4 (27-75)||(28158017-28158065)
[»] chr1 (3 HSPs)
chr1 (29-60)||(24701117-24701148)
chr1 (27-61)||(29230074-29230108)
chr1 (27-60)||(30847737-30847770)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 8148103 - 8148421
Alignment:
Q  1 ctcgatactaacactttgatacccaaaataatttgaaaaaatgacataattgaatgtaatactatgtttcaatgtcgtatcagtatagtgtggtgttata 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8148103 ctcgatactaacactttgatacccaaaataatttgagaaaatgacataattgaatgtaatcgtatgtttcaatgtcgtatcagtatagtgtggtgttata 8148202  T
Q  101 tatgacattcagttg-ttattcatccaaacaggtcatggcaaaggtcatggcaatactagaaggtaatagaaattgagaactatgtagcaccgacatttc 199  Q
    ||||||||||||||| ||||||||||||||            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8148203 tatgacattcagttgtttattcatccaaac------------aggtcatggcaatattagaaggtaatagaaattgagaactatgtagcaccgacatttc 8148290  T
Q  200 cgatggaaggcatgtccggtgtccgacaccgagacgacactgacactgacgcatgtaattatattcaattaagtcacttttacaatcagtgtcgaatcca 299  Q
    |||||||||||||||| ||||||||||||              ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8148291 cgatggaaggcatgtctggtgtccgacac--------------cactgacgcatgtaattatattcaattaagtcacttttacagtcagtgtcgaatcca 8148376  T
Q  300 tgtcaacgtgtcagggtcgtatccagtgtgtacttcatagattgg 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8148377 tgtcaacgtgtcagggtcgtatccagtgtgtacttcatagattgg 8148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 381 - 619
Target Start/End: Original strand, 8148459 - 8148697
Alignment:
Q  381 gtgaatatttggcttaagagtccaggaatggggtttaaacattcaatcaacaacaacnnnnnnngaagctaaaatctagtaataaaaaagcgattataag 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||| ||||||||||||||||    
T  8148459 gtgaatatttggcttaagagtccaggaatggggtttaaacattcaatcaacaataacaaaaaaagaagctaaaatctagtaattaaaaagcgattataag 8148558  T
Q  481 aaagaataagattattgtgatacgtacagaagatagagaaaaccgagagaatgaatggaaggatcaatgagttgaagaattggatagagacgagatgaat 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8148559 aaagaataagattattgtgatacgtacagaagatagagaaaaccgagagaatgaatggaaggatcaatgagttgaagaattggatagagacgagatgaat 8148658  T
Q  581 cggaacggagagtttcatcggagtgtttcaagatggtat 619  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8148659 cggaacggagagtttcatcggagtgtttcaagatggtat 8148697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 13815212 - 13815166
Alignment:
Q  26 aaataatttgaaaaaatgacataattgaatgtaatactatgtttcaa 72  Q
    ||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  13815212 aaataatttcataaaatgacataattgaatgtaataatatgtatcaa 13815166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 33076417 - 33076451
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaata 61  Q
    |||||||||| ||||||||||||||||||||||||    
T  33076417 aataatttgagaaaatgacataattgaatgtaata 33076451  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 2493464 - 2493431
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||||||| |||||||||||||||||||||||    
T  2493464 aataatttgacaaaatgacataattgaatgtaat 2493431  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 17168903 - 17168935
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaa 59  Q
    ||||||||||||||||||||||||| |||||||    
T  17168903 aataatttgaaaaaatgacataattcaatgtaa 17168935  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16881137 - 16881178
Alignment:
Q  19 atacccaaaataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  16881137 atacccataataatttgaaaaaatgacataatttaatgtaat 16881178  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 38749613 - 38749580
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  38749613 aataatttgaaaaaatgacataattcaatgtaat 38749580  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 12478379 - 12478335
Alignment:
Q  183 tgtagcaccgacatttccgatggaaggcatgtccggtgtccgaca 227  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||    
T  12478379 tgtagcaccgacatttctgatggaaggcgtgtctggtgtctgaca 12478335  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 21110513 - 21110473
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaatactatgt 67  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  21110513 aataatttgagaaaatgacataattgaatgtaatattatgt 21110473  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 12704707 - 12704674
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  12704707 aataatttgaaaaaatgacataattcaatgtaat 12704674  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 32166233 - 32166200
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||||||| |||||||||||||||||||||||    
T  32166233 aataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 41319360 - 41319327
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  41319360 aataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 20154001 - 20154052
Alignment:
Q  177 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 228  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  20154001 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 20154052  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 20203469 - 20203418
Alignment:
Q  177 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 228  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  20203469 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 20203418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 14229642 - 14229598
Alignment:
Q  185 tagcaccgacatttccgatggaaggcatgtccggtgtccgacacc 229  Q
    |||||| |||| ||| ||| |||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgacacc 14229598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 33049155 - 33049123
Alignment:
Q  28 ataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||| ||||||||||||||||||||||||||||    
T  33049155 ataacttgaaaaaatgacataattgaatgtaat 33049123  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 40152978 - 40153018
Alignment:
Q  183 tgtagcaccgacatttccgatggaaggcatgtccggtgtcc 223  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  40152978 tgtagcaccgacttttctgatggaaggcatgtccgctgtcc 40153018  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 44287981 - 44287930
Alignment:
Q  177 gaactatgtagcaccgacatttccgatggaaggcatgtccggtgtccgacac 228  Q
    |||||||||||||||| || ||| |||||||||| |||||||||| ||||||    
T  44287981 gaactatgtagcaccggcacttctgatggaaggcgtgtccggtgttcgacac 44287930  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 27980796 - 27980838
Alignment:
Q  18 gatacccaaaataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||| |||||||||| |||||||||||||||| ||||||||    
T  27980796 gataccgaaaataattttaaaaaatgacataattcaatgtaat 27980838  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 43093581 - 43093542
Alignment:
Q  21 acccaaaataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  43093581 acccataataatttgaaaaaatggcataattgaatgtaat 43093542  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 2976703 - 2976736
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||||||| |||||||||||||||||||||||    
T  2976703 aataatttgagaaaatgacataattgaatgtaat 2976736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 8457934 - 8457967
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||||||| |||||||||||||||||||||||    
T  8457934 aataatttgagaaaatgacataattgaatgtaat 8457967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 27096051 - 27096018
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    |||||||||| |||||||||||||||||||||||    
T  27096051 aataatttgacaaaatgacataattgaatgtaat 27096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 28158017 - 28158065
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaatactatgtttcaatgt 75  Q
    ||||||||||||||||||||| ||| ||||||||  ||||| |||||||    
T  28158017 aataatttgaaaaaatgacatgatttaatgtaattatatgtgtcaatgt 28158065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 24701148 - 24701117
Alignment:
Q  29 taatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||||||||||||||||||||||||||||    
T  24701148 taatttgaaaaaatgacataattgaatgtaat 24701117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 29230074 - 29230108
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaata 61  Q
    |||||||||| ||||||||||||||||||||||||    
T  29230074 aataatttgagaaaatgacataattgaatgtaata 29230108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 30847770 - 30847737
Alignment:
Q  27 aataatttgaaaaaatgacataattgaatgtaat 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  30847770 aataatttgaaaaaatgacataattcaatgtaat 30847737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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