View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_2 (Length: 1380)
Name: NF11854_high_2
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_2 |
 | |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 1109; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1109; E-Value: 0
Query Start/End: Original strand, 10 - 1365
Target Start/End: Original strand, 30414695 - 30416056
Alignment:
| Q |
10 |
gagcagagaccaaacccacacggttctgaacatcgagcgtgaaccacaagacgaggagaacaccgggaaacgaacattgcttagccggttgaaagacata |
109 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414695 |
gagcacagaccaaacccacacagttctgaacatcgagcgtgaaccacaagacgaggagaacaccgggaaacgaacattgcttagccggttgaaagacata |
30414794 |
T |
|
| Q |
110 |
caccaagccccactcgcactacacataagacaaaatgcgacaacagccaagacacatcagaacacacaaaaagccacacgcgacagacccaaaacaacac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||| |
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|
| T |
30414795 |
caccaagccccactcgcactacacataagacaaaatgcgacaacagccaagacacattagaacacacacaaagccacacgcgacagacctaaaataacac |
30414894 |
T |
|
| Q |
210 |
ctccgcaccaccgcaatactaaacgaaccaacacaaaaacaccaccagacccaaacatacgagcagaccctaatcctaattagttgaaaactaaaaacat |
309 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
30414895 |
ctccgcaccaccgcaatactacatgaaccaacacaaaaacaccaccagacccgaacatgcgagcagaccttaatcctaattagttgaaaactaaaaacat |
30414994 |
T |
|
| Q |
310 |
atttaaacaaaataaatgtgtcaccatttttaattttagtgatagcatgcacattattttggtgtctattttttattctaatacaatataaatt-ataga |
408 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
30414995 |
aattaaacaaaataaatgtgtcaccatttttaattttagtgatagcatgtacattattttggtgtctattttttattctgatacaatataaattaataga |
30415094 |
T |
|
| Q |
409 |
gtttagcatgcactactaaccttgcagaaacactaattccaaacggtaccatccaaagcataccggatatattaacactgtagatgaaaaagtaaattta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415095 |
gtttagcatgcactactaaccttgcagaaacactaattccaaacggtaccatccaaagcataccggatatattaacactgtagatgaaaaagtaaattta |
30415194 |
T |
|
| Q |
509 |
gccacagataacaaagcaataatggttgtatctgagttagaaataagaacataaagtttctacaacaaatagtgggaataatcctcagaacaataatgac |
608 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
30415195 |
gccacagataataaagcaataatggttgtatctgagttagaaataagaacataaagtttctacaacaaatagtgggaataatcctcagaac---aatgac |
30415291 |
T |
|
| Q |
609 |
taataagaaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattcta |
708 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415292 |
taaaaagaaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattcta |
30415391 |
T |
|
| Q |
709 |
agctgtaaaatgttagtgatacaatagagatgcaattagaaattctcagtggataaataac--agtctcatatttgtataacattatactgacatggcac |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30415392 |
agctgtaaaatgttagtgatacaatagagatgcaattagaaattctcagtggataaataacatagtctcatatttgtataacattatattgacatggcac |
30415491 |
T |
|
| Q |
807 |
gattcctgtttcaaaaggtatatctgctaaatcatatttaacggtattgttatgttgtagtattacatctcaaaattaattcacactgttgatagtaaaa |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |
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|
| T |
30415492 |
gattcctgtttcaaaaggtatatctgctaaatcatatttaacggtattgttatgttgtagtattacatctcaaaattaattcacactattaataataaaa |
30415591 |
T |
|
| Q |
907 |
tttgagtagacgtttatgaaaaactttttcatactattggggtatagcgactaaacttnnnnnnngaagtatcatctttatctttattcttattcttat- |
1005 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||||| |
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|
| T |
30415592 |
tttgagtagacatttatgaaaaactttttcatactattggggtataacgactaaacataaaaaaa-aagtatcatctttatccttattcttattcttatt |
30415690 |
T |
|
| Q |
1006 |
-ttattgagtagacgt-----ttatgcaaccctaattgccaaacccttgaccctaaacaattgttgggaacacacattaaatggccagctgatgaacacg |
1099 |
Q |
| |
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||||| || | | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30415691 |
cttattatttaatcctagcagacatgcaaccctaattacgaaacccttgaccctaaacaattgttgggaacacacattaaatggccagctgatgaacaca |
30415790 |
T |
|
| Q |
1100 |
catagtaacgcacatgaaatgactagctactatgcttcatttgaaattcagcgttaagacacctttccatcttccatacacgttaacttctattctattt |
1199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415791 |
catagtaacgcacatgaaatgactagctactatgcttcatttgaaattcagcgttaagacacctttccatcttccatacacgttaacttctattctattt |
30415890 |
T |
|
| Q |
1200 |
cccatgtagaaaattttctacgcaccttccattttcaacgatgacctttccctattccaacaaacattaataacatacactacaatttccaatacataaa |
1299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30415891 |
cccatgtagaaaattttctacgcaccttccattttcaacgatgacctttccctattccaacaaacattaataacatacactacactttccaatacataaa |
30415990 |
T |
|
| Q |
1300 |
tatctcaagaaatgctttacttttgctccaattttctagaaaacaaagaggaaagcattgttcaaa |
1365 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
30415991 |
tatctcaagaaatgctttactttttgtccaattttatagaaaacaaagaggcaagcattattcaaa |
30416056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 604 - 789
Target Start/End: Original strand, 30431924 - 30432108
Alignment:
| Q |
604 |
atgactaataagaaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatga |
703 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
30431924 |
atgactagaaagaaactaaccatatagaaaggactgaagtttgcaattttgggttgggaagagcaccagaaaggagcaccattatttcaaatgtccatga |
30432023 |
T |
|
| Q |
704 |
ttctaagctgtaaaatgttagtgatac-aatagagatgcaattagaaattctcagtggataaataacagtctcatatttgtataaca |
789 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| |||||| |||||| ||||||| || |||||||||| ||||||||| |
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|
| T |
30432024 |
ttctaagctgtaaaacgttagtgatacaaatagagatgcagttagaatttctcaatggataa--aatagtctcatatatgtataaca |
30432108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 614 - 716
Target Start/End: Original strand, 30380585 - 30380687
Alignment:
| Q |
614 |
agaaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattctaagctg |
713 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| || |||||||||| || |||||||||||||||||| ||| |
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|
| T |
30380585 |
agaaactaaccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatgtccatgattctaaactg |
30380684 |
T |
|
| Q |
714 |
taa |
716 |
Q |
| |
|
||| |
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|
| T |
30380685 |
taa |
30380687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 616 - 718
Target Start/End: Original strand, 30476722 - 30476824
Alignment:
| Q |
616 |
aaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattctaagctgta |
715 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| | |||||| ||||||| |||||| ||||| |||||||||| | | |||| |||||||||||||| |
|
|
| T |
30476722 |
aaactaaccatatagcaagcactgaagtttgcaattttggattaggaagagtaccagagaggagaaccattatttcatacatccaagattctaagctgta |
30476821 |
T |
|
| Q |
716 |
aaa |
718 |
Q |
| |
|
||| |
|
|
| T |
30476822 |
aaa |
30476824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 636 - 736
Target Start/End: Original strand, 30372387 - 30372487
Alignment:
| Q |
636 |
actgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattctaagctgtaaaatgttagtgatacaatag |
735 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||| | ||||| ||||||| ||||||||||||| || | | ||| |||||||||||||| |
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|
| T |
30372387 |
actgatgtttgcaatattggattgggaagagcaccagataggaggagcattaattgaaatttccatgattctaaactatgacatggtagtgatacaatag |
30372486 |
T |
|
| Q |
736 |
a |
736 |
Q |
| |
|
| |
|
|
| T |
30372487 |
a |
30372487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 404 - 543
Target Start/End: Original strand, 30431729 - 30431868
Alignment:
| Q |
404 |
atagagtttagcatgcactactaaccttgcagaaacactaattccaaacggtaccatccaaagcataccggatatattaacactgtagatgaaaaagtaa |
503 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||| |||||| | ||||| |||| |||||||| |||||| |||| ||||| |||| |||||||| |||| |
|
|
| T |
30431729 |
atagagctcagcatgcaagactaaccttccagcaacactgaccccaaatggtatcatccaaaacataccagatacattaatactgaggatgaaaatgtaa |
30431828 |
T |
|
| Q |
504 |
atttagccacagataacaaagcaataatggttgtatctga |
543 |
Q |
| |
|
|||| | || | |||||||| |||||| ||||||||||| |
|
|
| T |
30431829 |
atttggtcatatataacaaaacaataaatgttgtatctga |
30431868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 616 - 718
Target Start/End: Original strand, 30470353 - 30470455
Alignment:
| Q |
616 |
aaactaaccatatagaaaggactgaagtttgcaactgtggattgggaagagcaccagacaggagcaccattatttgaaatgtccatgattctaagctgta |
715 |
Q |
| |
|
||||| |||||| |||||| || || |||||||| | |||||| ||||||| ||| || |||||||||||||||| | | ||||||||||||||||| | |
|
|
| T |
30470353 |
aaacttaccataaagaaagtaccgatgtttgcaattttggattaggaagagtaccggataggagcaccattatttcatacatccatgattctaagctgca |
30470452 |
T |
|
| Q |
716 |
aaa |
718 |
Q |
| |
|
||| |
|
|
| T |
30470453 |
aaa |
30470455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 237; Significance: 1e-130; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 1077 - 1366
Target Start/End: Complemental strand, 77785 - 77498
Alignment:
| Q |
1077 |
taaatggccagctgatgaacacgcatagtaacgcacatgaaatgactagctactatgcttcatttgaaattcagcgttaa-gacacctttccatcttcca |
1175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
77785 |
taaatggccagctgatgaacacgcatagtaacgcacatgaaatgactagctactatgcttcatttgaaattcagcgttaaagacacctctccatcttcca |
77686 |
T |
|
| Q |
1176 |
tacacgttaacttctattctatttcccatgtagaaaattttctacgcaccttccattttcaacgatgacctttccctattccaacaaacattaataacat |
1275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
77685 |
tacacgttaacttctattctatttcccatgtagaaaattttctacgcaccttccag---caacgatgacctttccctattccaacaaacataaataacat |
77589 |
T |
|
| Q |
1276 |
acactacaatttccaatacataaatatctcaagaaatgctttacttttgctccaattttctagaaaacaaagaggaaagcattgttcaaat |
1366 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
77588 |
acactacgctttccaatacataaatatctcaagaaatgctttactttttgtccaattttctagaaaacaaagaggtaagcattgttcaaat |
77498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1023 - 1056
Target Start/End: Complemental strand, 77815 - 77782
Alignment:
| Q |
1023 |
atgcaaccctaattgccaaacccttgaccctaaa |
1056 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
77815 |
atgcaaccctaattgccaaacccttgaccctaaa |
77782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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