View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_20 (Length: 596)

Name: NF11854_high_20
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_20
NF11854_high_20
[»] chr1 (4 HSPs)
chr1 (34-156)||(43583786-43583906)
chr1 (157-247)||(5900148-5900238)
chr1 (161-197)||(46315411-46315447)
chr1 (160-247)||(44289342-44289429)
[»] chr7 (3 HSPs)
chr7 (158-246)||(7744400-7744488)
chr7 (157-196)||(45638351-45638390)
chr7 (160-197)||(45639106-45639143)
[»] chr8 (3 HSPs)
chr8 (155-247)||(31882640-31882732)
chr8 (158-198)||(37810321-37810361)
chr8 (157-198)||(37811078-37811119)
[»] chr5 (2 HSPs)
chr5 (158-247)||(2358561-2358650)
chr5 (157-209)||(31659047-31659099)
[»] chr4 (1 HSPs)
chr4 (162-247)||(30057815-30057900)
[»] chr3 (5 HSPs)
chr3 (157-209)||(16254283-16254333)
chr3 (161-197)||(16253552-16253588)
chr3 (158-198)||(23709531-23709571)
chr3 (158-198)||(23727987-23728027)
chr3 (158-198)||(23746443-23746483)
[»] scaffold0059 (1 HSPs)
scaffold0059 (157-209)||(8927-8979)
[»] scaffold0013 (1 HSPs)
scaffold0013 (157-209)||(236419-236471)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 43583906 - 43583786
Alignment:
Q  34 tgatcaaaattccgaatatgagttcagtgcatccttatgccacttcaacacatcctttgatcaaatcccatcactccgcattctcccaaatctggacagc 133  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43583906 tgatcaaaattccgaat--gagttcagtgcatccttatgccacttcaacatatcctttgatcaaatcccatcactctgcattctcccaaatctggacagc 43583809  T
Q  134 tttgttacatccactaataggtg 156  Q
    ||||||||| |||||||||||||    
T  43583808 tttgttacacccactaataggtg 43583786  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 5900238 - 5900148
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 247  Q
    |||||||||||||||||||||| || ||||||||||||||||  ||||||||||  | ||||  |||||||||||| |||| |||||||||    
T  5900238 gggggcatatcacatgagaatgatagttatatgtgagaatgataagaataaatacaagccactagattaaaaagaaaggctaagattaaaa 5900148  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 46315447 - 46315411
Alignment:
Q  161 gcatatcacatgagaatgctatttatatgtgagaatg 197  Q
    |||||||||||||||||| ||||||||||||||||||    
T  46315447 gcatatcacatgagaatgatatttatatgtgagaatg 46315411  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 44289342 - 44289429
Alignment:
Q  160 ggcatatcacatgagaatgc-tatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 247  Q
    |||||||||||||||||||  ||| | ||||||||||||| |||||||||| | | ||  | ||||||||| ||||| |||||||||||    
T  44289342 ggcatatcacatgagaatgggtatct-tatgtgagaatgatgagaataaattacagccgtcagattaaaaataatgggtgagattaaaa 44289429  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 7744488 - 7744400
Alignment:
Q  158 ggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaa 246  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||||  |||||   ||||||||||||||||| ||||||||    
T  7744488 ggggcatatcacatgagaatggtagttatatgtgagaatgatgagaataaatagaaaccattagattaaaaagaatggcttagattaaa 7744400  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 45638351 - 45638390
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaat 196  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  45638351 gggggcatatcacatgagaatgatatttatatgtgagaat 45638390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 45639143 - 45639106
Alignment:
Q  160 ggcatatcacatgagaatgctatttatatgtgagaatg 197  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  45639143 ggcatatcacatgaaaatgatatttatatgtgagaatg 45639106  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 31882640 - 31882732
Alignment:
Q  155 tggggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 247  Q
    |||||||||||||||||||||||| || ||||||||||||||||  ||||||||||  ||||||  |||||||||||| |||| || ||||||    
T  31882640 tggggggcatatcacatgagaatgatagttatatgtgagaatgataagaataaatatgaaccactagattaaaaagaagggctaagtttaaaa 31882732  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 37810321 - 37810361
Alignment:
Q  158 ggggcatatcacatgagaatgctatttatatgtgagaatga 198  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  37810321 ggggcatatcacatgagaatgatatttataggtgagaatga 37810361  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 37811119 - 37811078
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatga 198  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  37811119 gggggcatatcgcatgagaatgatatttataggtgagaatga 37811078  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 2358561 - 2358650
Alignment:
Q  158 ggggcatatcacatgagaatgc-tatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 247  Q
    |||||||||||||||||||||  ||| | ||||||||||||| |||||||||| | | ||| | ||||||||  ||||| |||||||||||    
T  2358561 ggggcatatcacatgagaatggatatct-tatgtgagaatgatgagaataaattacacccatcagattaaaagcaatggatgagattaaaa 2358650  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 31659099 - 31659047
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 209  Q
    |||| |||||||||||||||||  |||| ||||||||||||  ||||||||||    
T  31659099 ggggacatatcacatgagaatgacatttgtatgtgagaatggtgagaataaat 31659047  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 30057900 - 30057815
Alignment:
Q  162 catatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 247  Q
    |||||||||||||||||  | ||||||||||||||||  ||||||||||  | |||   ||||||||   ||||||||||||||||    
T  30057900 catatcacatgagaatgacaattatatgtgagaatgataagaataaataggagccattagattaaaatacatggctgagattaaaa 30057815  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 16254333 - 16254283
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 209  Q
    |||||||||||||||||||||| ||||  |||||||||||||  |||||||||    
T  16254333 gggggcatatcacatgagaatgatatt--tatgtgagaatgataagaataaat 16254283  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 16253552 - 16253588
Alignment:
Q  161 gcatatcacatgagaatgctatttatatgtgagaatg 197  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  16253552 gcatatcacatgagaatgatatttatatatgagaatg 16253588  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23709531 - 23709571
Alignment:
Q  158 ggggcatatcacatgagaatgctatttatatgtgagaatga 198  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23709531 ggggcatatcacatgagaatgatagttatatatgagaatga 23709571  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23727987 - 23728027
Alignment:
Q  158 ggggcatatcacatgagaatgctatttatatgtgagaatga 198  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23727987 ggggcatatcacatgagaatgatagttatatatgagaatga 23728027  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 23746443 - 23746483
Alignment:
Q  158 ggggcatatcacatgagaatgctatttatatgtgagaatga 198  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23746443 ggggcatatcacatgagaatgatagttatatatgagaatga 23746483  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 8927 - 8979
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 209  Q
    ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||    
T  8927 gggggcatatcacatgagaatggcttttgtatgtgagaatggtgagaataaat 8979  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 236471 - 236419
Alignment:
Q  157 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 209  Q
    ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||    
T  236471 gggggcatatcacatgagaatggcttttgtatgtgagaatggtgagaataaat 236419  T

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