View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_21 (Length: 572)
Name: NF11854_high_21
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 34593813 - 34593238
Alignment:
| Q |
1 |
acagaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatg-----aaacaaaatttagatactta-----------------gtatt |
78 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
34593813 |
acagaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatgtgatgaaacaaaatttagatacttaccagcccttgacttctagtatt |
34593714 |
T |
|
| Q |
79 |
gtgatggcattgccattgtcatgacatcctttaagcaaatcgtttttgatttttcactaaattggtttcttttgtatatactgataggctcctttattgg |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34593713 |
gtgatggcattgccattgtcatgacatcctttaagcaaattgtttttgatttttcactaaattggtttcttttgtatataatgataggctcctttattgg |
34593614 |
T |
|
| Q |
179 |
ttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcat |
278 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593613 |
ttggttgtgatattcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaaggtatagataaaacagaattcat |
34593514 |
T |
|
| Q |
279 |
gaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgcagataaactagg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
34593513 |
gaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgcagacaaactagg |
34593414 |
T |
|
| Q |
379 |
agttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatcc-nnnnnnnnaataaaat |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
34593413 |
agttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaat |
34593315 |
T |
|
| Q |
478 |
ttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgat |
554 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34593314 |
ttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 34577845 - 34577750
Alignment:
| Q |
162 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaagg |
257 |
Q |
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||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||||||| | |||| |||||| ||||||||||||||||||||||| |
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| T |
34577845 |
ataggctcctttattagttggatgtaatattcaagcaatggataataccacatatgaattgataagcaactcagaagttattgcagtaaaccaagg |
34577750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
364 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
420 |
Q |
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|||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 32590078 - 32589981
Alignment:
| Q |
162 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
259 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||| |||||||||| || ||| |||||| | |||| |||||| ||||||||||||||||||||||||| |
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| T |
32590078 |
ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32589981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 32600526 - 32600429
Alignment:
| Q |
162 |
ataggctcctttattggttggttgtgatattcgtgcaatggatagtaccacatatgaactaataaccaactcggaagttattgcagtaaaccaaggta |
259 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||| |||||||||| || ||| |||||| | |||| |||||| ||||||||||||||||||||||||| |
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| T |
32600526 |
ataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaattgataagcaactctgaagttattgcagtaaaccaaggta |
32600429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
361 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
420 |
Q |
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||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
361 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
420 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
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|
| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24883727 - 24883773
Alignment:
| Q |
1 |
acagaagaatatcgttcacatttcagcatatgggctttagctaaggt |
47 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| |||||| |
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| T |
24883727 |
acagaagaatatcgtgcccatttcagcatatgggcattagttaaggt |
24883773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
363 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
425 |
Q |
| |
|
||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| |||| |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32590219 - 32590173
Alignment:
| Q |
1 |
acagaagaatatcgttcacatttcagcatatgggctttagctaaggt |
47 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
32590219 |
acagaggaatatcgttcccatttcagcatctgggcattagctaaggt |
32590173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32600667 - 32600621
Alignment:
| Q |
1 |
acagaagaatatcgttcacatttcagcatatgggctttagctaaggt |
47 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
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|
| T |
32600667 |
acagaggaatatcgttcccatttcagcatctgggcattagctaaggt |
32600621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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