View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_26 (Length: 473)
Name: NF11854_high_26
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 2651569 - 2651121
Alignment:
| Q |
11 |
cagagaaagtgagaggcattccaaggtttggtcaacatcctaacaaaaattggattggtgatnnnnnnn---ttaacaaagtatcatgatcagaaaactt |
107 |
Q |
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| T |
2651569 |
cagagaaagtgagaggcattccaaggtttggtcaacatcctaacaaaaattggattggtgataaaaaaaaaattaacaaagtatcatgatcagaaaactt |
2651470 |
T |
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| Q |
108 |
gcatgcatttaatttgttttaacatttaaaaagatgtttaaagtaacaaaaccaagttgataatacaagcatgctattggtcctttttgtgaacaacttt |
207 |
Q |
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| T |
2651469 |
gcatgcattt-----gttttaacatttaaaaagatgtttaaagtaacaaaaccaagttgataatacaagcatgctattggtcctttttgtgaacaacttt |
2651375 |
T |
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| Q |
208 |
tttatttagtagttacaaaacaatatatata----gattcagaagtattgcagaatcatcaattgggtgaaacttctgatgcttttgctcaagtgagaaa |
303 |
Q |
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| T |
2651374 |
tttatttagtagttacaaaacaatatatatatatagattcagaagtattgcagaatcatcaattgggtgaaacttctgatgcttttgctcaagtgagaaa |
2651275 |
T |
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| Q |
304 |
aatccaacaatactgagcaataaagaggaaaatgtttttgtcttatgtagcatttgcttgtaggcaatgttttaaaattatgtggtccatgaggctatga |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2651274 |
aatccaacaatactgagcaataaagaggaaaatgtttttgtcttatgtagcatttgcttgtaggcaatgttttaaaattatgtggtccatgaggctatga |
2651175 |
T |
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| Q |
404 |
catcagtatttcagagatctatcataaaattataatgtgtatcaggggtggtat |
457 |
Q |
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| T |
2651174 |
catcagtatttcagagatctatcataaaattataatgtgtatcaggggtggtat |
2651121 |
T |
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