View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_32 (Length: 417)

Name: NF11854_high_32
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_32
NF11854_high_32
[»] chr1 (11 HSPs)
chr1 (1-417)||(6517077-6517502)
chr1 (4-417)||(6512681-6513103)
chr1 (1-416)||(6521534-6521958)
chr1 (1-417)||(6506771-6507202)
chr1 (288-384)||(47713349-47713445)
chr1 (129-236)||(47778041-47778148)
chr1 (151-380)||(47718012-47718235)
chr1 (288-384)||(47745932-47746028)
chr1 (151-380)||(47760133-47760356)
chr1 (292-384)||(6500239-6500331)
chr1 (151-216)||(6523745-6523810)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-417)||(796-1227)
scaffold0341 (1-417)||(8449-8881)
[»] chr5 (3 HSPs)
chr5 (201-380)||(28856511-28856690)
chr5 (271-380)||(28831385-28831494)
chr5 (271-380)||(28861858-28861967)
[»] chr7 (1 HSPs)
chr7 (175-320)||(722161-722305)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6517077 - 6517502
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517077 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 6517176  T
Q  101 ccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 200  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517177 ccgtcttcaaactccatgcttcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 6517276  T
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517277 accaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 6517376  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgag---------aagggtgt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  6517377 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgt 6517476  T
Q  392 taaggtttgtgtggtaggtgctgttg 417  Q
    ||||||||||||||||||||||||||    
T  6517477 taaggtttgtgtggtaggtgctgttg 6517502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 417
Target Start/End: Original strand, 6512681 - 6513103
Alignment:
Q  4 acagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcgccg 103  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| | ||      
T  6512681 acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcat 6512780  T
Q  104 tgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaacc 203  Q
    |||||||||||||| ||  |||| |||||| | | ||||  ||||| ||||||||||||  ||||||||||||||||||| |||| ||||| ||||||||    
T  6512781 tgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaacc 6512880  T
Q  204 aattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagt 303  Q
    ||| || | ||||| |||||||||||||||||||||||| |||| |||||| |  |  |||||| |||||||||| ||||| | ||||||||| || |||    
T  6512881 aatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagt 6512980  T
Q  304 ccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaa 394  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||         |||||||||||||    
T  6512981 ccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaa 6513080  T
Q  395 ggtttgtgtggtaggtgctgttg 417  Q
    ||||| |||| ||||||||||||    
T  6513081 ggtttttgtgataggtgctgttg 6513103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 6521958 - 6521534
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   |||  |||||| | ||| ||| | |||||| | |    
T  6521958 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttg 6521859  T
Q  101 ccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 200  Q
    |  ||||   | ||||  |   ||||  ||||||||| || | ||||||||||||||||||| ||||||||||||||||||||   ||||| | ||||||    
T  6521858 cgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtacca 6521759  T
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
     |||||||||| |||||  ||||||||| ||||||||||||  ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| |||    
T  6521758 tccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacat 6521659  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgag---------aagggtgt 391  Q
    |||||||| ||||||||||||||  ||||  | ||||||||||| |||||||||||||||||||| |||||||||||||||||         ||||||||    
T  6521658 agtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgt 6521559  T
Q  392 taaggtttgtgtggtaggtgctgtt 416  Q
    |||||||||||||||||||||||||    
T  6521558 taaggtttgtgtggtaggtgctgtt 6521534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6506771 - 6507202
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  6506771 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 6506870  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  6506871 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 6506969  T
Q  194 cgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcc 293  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||    
T  6506970 cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc 6507069  T
Q  294 tctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------aga 384  Q
    ||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||    
T  6507070 tctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggataga 6507169  T
Q  385 agggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    ||||| || ||||||||||||||||||||||||    
T  6507170 agggttttgaggtttgtgtggtaggtgctgttg 6507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 47713349 - 47713445
Alignment:
Q  288 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||||||||||| |||||||| ||||||||||||||| |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47713349 atctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 47778148 - 47778041
Alignment:
Q  129 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 228  Q
    ||||||||| |||| ||| | |||||||||||||  ||||||||||||||||||| | ||||| |||||||||||||||||||  ||| | ||| |||||    
T  47778148 aggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaa 47778049  T
Q  229 agttgtgt 236  Q
    ||||||||    
T  47778048 agttgtgt 47778041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 380
Target Start/End: Original strand, 47718012 - 47718235
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 250  Q
    |||||||| ||| |||||||||||||||||||       ||| | ||||||||||| |||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47718012 aatattgatcggtttgagtaacgcaacatgcag------tcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg 47718105  T
Q  251 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 350  Q
    |||  | ||||||| |||| ||| | |  ||||| | |||||||||||| || ||||  ||||||||||||||  |||||  |||||||||| | || ||    
T  47718106 aatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta 47718205  T
Q  351 gaaaccgtagttgatttctttgttggaagt 380  Q
    ||||||||||||||||||| ||||||||||    
T  47718206 gaaaccgtagttgatttctgtgttggaagt 47718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 47745932 - 47746028
Alignment:
Q  288 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||||||||||| |||||||| ||||||||||| ||  |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47745932 atctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 380
Target Start/End: Original strand, 47760133 - 47760356
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 250  Q
    |||||||| ||| |||||||||||||||||||  ||||||      ||||||||||||||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  251 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 350  Q
    |||  | ||||||| | || ||| | |  ||||| | ||||||||| || |||||||| ||||||||||||||  |||||  |||||||||    || ||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta 47760326  T
Q  351 gaaaccgtagttgatttctttgttggaagt 380  Q
    |||||||||||||||||||  |||||||||    
T  47760327 gaaaccgtagttgatttctgcgttggaagt 47760356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 6500239 - 6500331
Alignment:
Q  292 cctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||| ||||||||| || ||||  |||||||||||||||  |||||  ||  | || ||||||||||||||||||||| ||||||||||||||    
T  6500239 cctcggcatagtccgatcgcgtagactttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgaga 6500331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 6523810 - 6523745
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgtttt 216  Q
    ||||| ||||||  ||| ||||||||||||||| | ||||| || |||||||||||||||| ||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttt 6523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 796 - 1227
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  796 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 895  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  896 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 994  T
Q  194 cgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcc 293  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||    
T  995 cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc 1094  T
Q  294 tctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------aga 384  Q
    ||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||    
T  1095 tctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggataga 1194  T
Q  385 agggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    ||||| || ||||||||||||||||||||||||    
T  1195 agggttttgaggtttgtgtggtaggtgctgttg 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 8449 - 8881
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  8449 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 8548  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  8549 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 8647  T
Q  194 cgtaccaaccaattgcttgttttc-tattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctc 292  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | |||||    
T  8648 cgtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctc 8747  T
Q  293 ctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------ag 383  Q
    |||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         ||    
T  8748 ctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 8847  T
Q  384 aagggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    |||||| || ||||||||||||||||||||||||    
T  8848 aagggttttgaggtttgtgtggtaggtgctgttg 8881  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 380
Target Start/End: Original strand, 28856511 - 28856690
Alignment:
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
    ||||||||||| |||| | ||| |||||  |||||||||||  ||  ||||||| |  |||||| | || |||||||| || || | |||||||||||||    
T  28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagt 380  Q
    | ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| |||||||| ||||||||||    
T  28856611 aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagt 28856690  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 28831385 - 28831494
Alignment:
Q  271 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 370  Q
    |||||||| || || | ||||||||| |||| ||| || |||| |||||||| | ||  | |||| || ||| |||| |||||||||||| ||||||||     
T  28831385 caatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctg 28831484  T
Q  371 tgttggaagt 380  Q
    ||||||||||    
T  28831485 tgttggaagt 28831494  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 28861858 - 28861967
Alignment:
Q  271 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 370  Q
    |||||||| || || | |||||||||||||| ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| ||||||||     
T  28861858 caatcatttggattaacatctcctctgcataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctg 28861957  T
Q  371 tgttggaagt 380  Q
    ||||||||||    
T  28861958 tgttggaagt 28861967  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 320
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  175 aacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaat 274  Q
    ||||||||| | |||||||||||| | |||||||||| |||||  ||||   || ||||||||||||  ||| |||||| || | | |||||| ||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaattt-gacaat 722207  T
Q  275 cattcggttttaaatctcctctgcatagtccaattgcgtttacttt 320  Q
    ||||  | || | ||||||||| ||||||||||   ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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