View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_33 (Length: 413)
Name: NF11854_high_33
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 27215376 - 27214984
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27215376 |
tacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttc |
27215277 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27215276 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcgg |
27215177 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27215176 |
ttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatgga |
27215077 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27215076 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttca |
27214984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 27443525 - 27443917
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27443525 |
tacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttc |
27443624 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27443625 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcgg |
27443724 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27443725 |
ttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatgga |
27443824 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27443825 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttca |
27443917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 27221338 - 27220946
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27221338 |
tacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttc |
27221239 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221238 |
catcaccatggtcgggtagattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcgg |
27221139 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
27221138 |
ttgcaacggtgctggggcaatcccaccagcaacattggtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacgga |
27221039 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
27221038 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttca |
27220946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 27433085 - 27432693
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| ||| |||||| || ||| |||||||||| |
|
|
| T |
27433085 |
tacactgtatggccgggaacgttaactggagaccaaaagcctcagctatcaacaacgggttttgagttaggacctggagcaacaattgaggtggaccttc |
27432986 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432985 |
catcaccatggtcgggtcgattttggggacgaaccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcgg |
27432886 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27432885 |
ttgtaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatgga |
27432786 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
27432785 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttca |
27432693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 27208005 - 27207613
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| ||| |||||| || ||| | |||||||||| |
|
|
| T |
27208005 |
tacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcgacaacgggttttgagttaggacctggagcaacaattgcggtggaccttc |
27207906 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||||| | ||||||| |||| ||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
27207905 |
catcaccatggtcgggaagattttggggccgaactggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcgg |
27207806 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27207805 |
ttgcaacggtgctggcgcaatcccaccagcaacactggtagaaataacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatggg |
27207706 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttca |
393 |
Q |
| |
|
||||| ||||| ||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
27207705 |
ttcaatgtgcccatgtccgtaatgccacaaggtgggagtggtgactgcaaaaccgctagttgtcctaggaacattaatgttgtgtgtccttca |
27207613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 27389299 - 27388949
Alignment:
| Q |
1 |
tacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttc |
100 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||| || | |||| ||| ||| |
|
|
| T |
27389299 |
tacaccgtatggccaggaaccttaaccggagaccaaaaacctcagctatcaacaacaggtttcgagttaggacctggagcaacgaactcagcggaaattc |
27389200 |
T |
|
| Q |
101 |
catcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcgg |
200 |
Q |
| |
|
| || |||||||| ||||||||||||| |||||||||||||| | |||||| ||| |||||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
27389199 |
cttccccatggtcaggtcgattttgggcccgaaccggatgctcaaccaacaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgc |
27389100 |
T |
|
| Q |
201 |
ctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatgga |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| ||||| || || ||| |||| || |||||||||||||||||||||||||| || || || |
|
|
| T |
27389099 |
atgcaatggtgctggcgcaatcccaccagcaactttggttgaaattacagtggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacggt |
27389000 |
T |
|
| Q |
301 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaa |
351 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || ||||| || |||||| |
|
|
| T |
27388999 |
ttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgcaaa |
27388949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 27410252 - 27409919
Alignment:
| Q |
4 |
actgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccat |
103 |
Q |
| |
|
||||||||||||||||| || ||| || |||| ||||| ||||||| |||||||| ||||||||| ||||| || || ||| ||||||| | |
|
|
| T |
27410252 |
actgtatggccaggaacctttactacagctcaaacccctcaattatcaacaacaggttttgagttgggacaaggagtgacgtactcggtgaaccttcctt |
27410153 |
T |
|
| Q |
104 |
caccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctg |
203 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||| | |||||| | ||||||||| |||||||| |||||||||| ||||||||||| || || |
|
|
| T |
27410152 |
cttcatggtctggtcgattttgggcaagaaccggatgctcaatcaacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtg |
27410053 |
T |
|
| Q |
204 |
caacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattc |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||| || || ||||| ||| | ||| |||| || |||||||||||||||||||||||||| || || || ||| |
|
|
| T |
27410052 |
caatggtgctggcgcaatcccaccagcaactttagttgaaattaccatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttc |
27409953 |
T |
|
| Q |
304 |
aacgtgccaatgtctgtaacgccacaaggtggga |
337 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||| |
|
|
| T |
27409952 |
aacgtgccaatttttgtaactccacaaggtggga |
27409919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 27455201 - 27455087
Alignment:
| Q |
34 |
caaaaacctcagctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa |
133 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||||||||| |||| || |||||||||||||||||||||||||| || ||| ||||||| ||||||| |
|
|
| T |
27455201 |
caaaaacctcagctatgaacgacaagtttcgacttgggatctagagt-actatttcagtggaccttccatcaccatgatcaggttgattttgaggccgaa |
27455103 |
T |
|
| Q |
134 |
ccggatgcttcaacaa |
149 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
27455102 |
tcggatgctccaacaa |
27455087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 27454844 - 27454712
Alignment:
| Q |
159 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
258 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
259 |
aacgggggacaagatttctacgatgtgagcaat |
291 |
Q |
| |
|
|| || ||||||||||||| |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttctatgatgtgagcaat |
27454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 337
Target Start/End: Original strand, 27415924 - 27416142
Alignment:
| Q |
120 |
attttggggccgaa-ccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgc |
218 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| || ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || |
|
|
| T |
27415924 |
attttgggcccgaaaccggatgctcaaacaataacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgt |
27416023 |
T |
|
| Q |
219 |
aatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtct |
318 |
Q |
| |
|
||| |||||||||||||||| || || | || ||| |||| || ||||||||||| ||| ||||||||| |||| ||||| |||||| | ||| |
|
|
| T |
27416024 |
aattacaccagcaacattggttgacattaaagtggcatcaaatggaggacaagatttatacagtgtgagcaacacttatgggttcaatgtgccagtatct |
27416123 |
T |
|
| Q |
319 |
gtaacgccacaaggtggga |
337 |
Q |
| |
|
||||| |||| |||||||| |
|
|
| T |
27416124 |
gtaactccacgaggtggga |
27416142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 20952716 - 20952648
Alignment:
| Q |
261 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
329 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| ||| ||||||| |||||||||| |
|
|
| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtcaataacgccaca |
20952648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 317
Target Start/End: Original strand, 41457693 - 41457895
Alignment:
| Q |
115 |
ggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctg |
214 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||| ||||| ||||| || ||||| || ||||||| ||| || ||||||| ||||| ||||| | |
|
|
| T |
41457693 |
ggtcggttttggggccgaaccggatgctcgagcaatgcaggaaaatttagttgcgccactgctgattgtggctccggccaagtcgcttgcaatggtgccg |
41457792 |
T |
|
| Q |
215 |
gcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtgccaat |
314 |
Q |
| |
|
| ||| | |||||||||||||| | |||| || ||||| | | ||||| |||||||| | ||||||| | |||||||| || || |||||||| || || |
|
|
| T |
41457793 |
gtgcagttccaccagcaacattagcagaactacacgtagaagccaacggtggacaagactactacgatataagcaatgttgacgggttcaacgtacccat |
41457892 |
T |
|
| Q |
315 |
gtc |
317 |
Q |
| |
|
||| |
|
|
| T |
41457893 |
gtc |
41457895 |
T |
|
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