View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_38 (Length: 379)
Name: NF11854_high_38
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 29287277 - 29286921
Alignment:
| Q |
19 |
caaactgccagtctgtcacaccagcaccagaaaacagacagaaaccgcataaaagccagaaagcatgcacaactgcactgtcagcctgataactgcaatg |
118 |
Q |
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| T |
29287277 |
caaactgccagtctgtcacaccagcaccagaaaacagacagaaaccgcataaaagccagaaagcatgcacaactgcactgtcagcctgataactgcaatg |
29287178 |
T |
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| Q |
119 |
aaccttccaccctcttctctcctcaatcactacaataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatctttgta |
218 |
Q |
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| T |
29287177 |
aaccttccaccctcttctctcctcaatcactataataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatctttgta |
29287078 |
T |
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| Q |
219 |
aactccatcttcattataacacctccacctcctccacgatctcctcatccaccctcgtgtcgttcttaaaaataattcgatttcttgcttgccaaatagc |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29287077 |
aactccatcttcatgataacacctccacctcctccacgatctcctcatccaccctcgtgtcattcttaaaaataattcgatttcttgcttgccaaatagc |
29286978 |
T |
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| Q |
319 |
ccacatggttgcgtaccaaataagccttaattaacccctttcaaattcgcttgttgttact |
379 |
Q |
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| T |
29286977 |
ccacatggttgcgtaccaaataagcc----ttaacccctttcaaattcgcttgttgttact |
29286921 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 10727932 - 10727978
Alignment:
| Q |
155 |
aggcagtcccttggattccaacttcattcataaaacaaacatgtcgg |
201 |
Q |
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| T |
10727932 |
aggcaatctcttgggttccaacatcattcataaaacaaacatgtcgg |
10727978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 3960858 - 3960922
Alignment:
| Q |
278 |
tcgttcttaaaaataattcgatttcttgcttgccaaatagcccacatggttgcgtaccaaataag |
342 |
Q |
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| T |
3960858 |
tcgttcttaaaaatgatttgatttctcgcttgccaaatggcccaaatcattgcatgccaaataag |
3960922 |
T |
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