View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_41 (Length: 371)
Name: NF11854_high_41
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 41997733 - 41997574
Alignment:
| Q |
70 |
attttcatcatgatcatgatatcttacatatgttacaataattaagatactgaatttagtgtggatttttggttgtcaaacaatgctgcgggattctcgg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41997733 |
attttcatcatgatcatgatatcttacatatgttacaataattaagatactgaatt--gtgtggatttttggttgtcaaacaatgctgcgggattctcgg |
41997636 |
T |
|
| Q |
170 |
caagttcttgttttaaacatttggtctaacatataaatacaaatgttcaatctattgatatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
41997635 |
caagttcttgttttaaacatttggtctcacatataaatacaaatgttcaatctagtgatatg |
41997574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 41997574 - 41997479
Alignment:
| Q |
263 |
gatttacgtttcatctaaagctaaggttatagtttgggtattacttaaaggaagaatagcaactagagacatttgctcaaaagaggggtgatgtcc |
358 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41997574 |
gatttatgtttcatctaaagctaaggttatagtttgaggattacttaaaggaagaatagcaactagagacatttgctcaaaagaggggtaatgtcc |
41997479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University