View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_42 (Length: 367)
Name: NF11854_high_42
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_42 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 48697846 - 48697481
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697846 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
48697747 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaacacaggaaagtggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697746 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaacacaggaaagtggtaa |
48697647 |
T |
|
| Q |
201 |
agccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaagttgaaaattcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697646 |
agccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaagttgaaaattcaca |
48697547 |
T |
|
| Q |
301 |
cgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48697546 |
tgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgca |
48697481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 30946208 - 30945842
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946208 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
30946109 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaacacaggaaagtggtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30946108 |
ctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaacacaggaaagtggtaa |
30946009 |
T |
|
| Q |
201 |
agccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaagttgaaaattcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946008 |
agccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaagttgaaaattcaca |
30945909 |
T |
|
| Q |
301 |
cgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945908 |
tgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcac |
30945842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 30950738 - 30950548
Alignment:
| Q |
177 |
attgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950738 |
attgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtt |
30950639 |
T |
|
| Q |
277 |
actatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950638 |
actatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcac |
30950548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 48702357 - 48702169
Alignment:
| Q |
179 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702357 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
48702258 |
T |
|
| Q |
279 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702257 |
tatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcac |
48702169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 42270196 - 42270380
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
42270196 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc |
42270295 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270296 |
tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
42270380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 2003182 - 2003267
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||| || ||| ||||||||||||||| |
|
|
| T |
2003182 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatcctc |
2003267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 27879263 - 27879075
Alignment:
| Q |
179 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879263 |
tgtggacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
27879164 |
T |
|
| Q |
279 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879163 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcac |
27879075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 26976917 - 26976733
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
26976917 |
gtggatatgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
26976818 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976817 |
tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
26976733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 27874733 - 27874549
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
27874733 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc |
27874634 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874633 |
tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
27874549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18967360 - 18967543
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| |||||| |||||||||||||||| |||||| |
|
|
| T |
18967360 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc |
18967459 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
|||||| |||| ||||||| | | || ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18967460 |
ctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 30968567 - 30968628
Alignment:
| Q |
125 |
tcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968567 |
tcggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaaca |
30968628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 21966493 - 21966610
Alignment:
| Q |
71 |
aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaacc-gaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| | ||| ||||||||||||||||||||| | || ||||||||| || ||| |
|
|
| T |
21966493 |
aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa |
21966586 |
T |
|
| Q |
170 |
gtgggagattgtgaacacaggaaa |
193 |
Q |
| |
|
|||||| |||||||||| |||||| |
|
|
| T |
21966587 |
gtgggatattgtgaacataggaaa |
21966610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 30986430 - 30986478
Alignment:
| Q |
309 |
taaatgcaattggttggggcatgactctttcactagtataaatagcatg |
357 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
30986430 |
taaatgtaattggttggggcatggctctttcactaatataaatagcatg |
30986478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 30966566 - 30966605
Alignment:
| Q |
318 |
ttggttggggcatgactctttcactagtataaatagcatg |
357 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30966566 |
ttggttggggcatggctctttcactagtataaatagcatg |
30966605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1472483 - 1472398
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||||||||||| |
|
|
| T |
1472483 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtcgatcctc |
1472398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 1472378 - 1472346
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaa |
1472346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 178 - 367
Target Start/End: Complemental strand, 5199192 - 5199003
Alignment:
| Q |
178 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
277 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199192 |
ttgtgaacataggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
5199093 |
T |
|
| Q |
278 |
ctatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199092 |
ctatgcaaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcac |
5199003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 829772 - 829956
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
829772 |
gtggatatgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
829871 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||| ||||||| | ||| ||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
829872 |
tattggaaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaaca |
829956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 28715370 - 28715548
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattgg |
107 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
28715370 |
atgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattga |
28715469 |
T |
|
| Q |
108 |
aaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
||| |||||||| ||||| ||| ||||||||||||||||| || | ||| || ||||||||||||||||||||||| |
|
|
| T |
28715470 |
aaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaaca |
28715548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 34614301 - 34614229
Alignment:
| Q |
197 |
gtaaagccac-ttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
268 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
34614301 |
gtaaagccaccttttgttgaattgttgtcacatggcagtaaaacatgttagcatgtaatttctatgtttacat |
34614229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 13840947 - 13840766
Alignment:
| Q |
9 |
tgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcct----cgtatggcctat |
104 |
Q |
| |
|
||||||||||||| || | |||||| ||| | ||||| ||||||| |||||||| || |||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
13840947 |
tgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctat |
13840848 |
T |
|
| Q |
105 |
tggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
||||||| ||||||| ||| ||||||| ||||| ||||| ||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
13840847 |
tggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaaca |
13840766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 28715678 - 28715731
Alignment:
| Q |
304 |
tgccataaatgcaattggttggggcatgactctttcactagtataaatagcatg |
357 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
28715678 |
tgccataaatgtaaatggttggggcatggttctttcactcctataaatagcatg |
28715731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 41722702 - 41722887
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722702 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
41722801 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722802 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
41722887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 179 - 343
Target Start/End: Complemental strand, 29585826 - 29585662
Alignment:
| Q |
179 |
tgtgaacacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
29585826 |
tgtgaacacaggaaagtggtaaagccacttttgttgaattgttatcacatggcagtaaaacatgttggcatgtagtttttatgttcacatggaaagttac |
29585727 |
T |
|
| Q |
279 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcacta |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29585726 |
tatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta |
29585662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 34359482 - 34359666
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
34359482 |
gtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcc |
34359581 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359582 |
tattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
34359666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 2817788 - 2817599
Alignment:
| Q |
179 |
tgtgaacacaggaaagtgg-taaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagtta |
277 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2817788 |
tgtgaacacaggaaagtgcataaagccacttttgttgaattgttatcacatggcagtaaaatatgttggcatgtaatttctatgttcacatgggaagtta |
2817689 |
T |
|
| Q |
278 |
ctatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
2817688 |
ctatgcaaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcac |
2817599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 54545438 - 54545622
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
54545438 |
gtggatatgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
54545537 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545538 |
tattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
54545622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 5819299 - 5819115
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
5819299 |
gtggatatgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcc |
5819200 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||| | ||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5819199 |
tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaaca |
5819115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 42589352 - 42589384
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaa |
42589384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 9440115 - 9439931
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
9440115 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcc |
9440016 |
T |
|
| Q |
102 |
tattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440015 |
tattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
9439931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 24594404 - 24594372
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaa |
24594372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 24594509 - 24594424
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||| ||||||| |
|
|
| T |
24594509 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc |
24594424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28060 - 27877
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || ||||| || ||||| |||| |||||| |||||||||||||||| |||||| |
|
|
| T |
28060 |
tgtggacatgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc |
27961 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27960 |
ctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2324139 - 2323956
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
2324139 |
tgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatcatcgtatgga |
2324040 |
T |
|
| Q |
101 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2324039 |
ctattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 30234920 - 30234974
Alignment:
| Q |
304 |
tgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgt |
358 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30234920 |
tgccataaatgtaattggttggggcatggctctttcactagtataaatagcatgt |
30234974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 22510209 - 22510368
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcgatcctcgtatgg |
99 |
Q |
| |
|
|||||| |||| ||||||||| || ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| |||| | ||| |
|
|
| T |
22510209 |
tgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaatccctctgtgg |
22510308 |
T |
|
| Q |
100 |
cctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaa |
159 |
Q |
| |
|
|||||| |||| ||| ||| | ||| ||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
22510309 |
cctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaa |
22510368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 7504781 - 7504696
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
7504781 |
atgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatcctc |
7504696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 7504676 - 7504644
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaa |
7504644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 41413523 - 41413367
Alignment:
| Q |
85 |
tcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||| ||||| ||| ||||| ||||| ||||||| | | ||||||| ||||| ||||||| ||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
41413523 |
tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa |
41413424 |
T |
|
| Q |
185 |
cacaggaaagtg-gtaaagccacttttgttgaagtg-ttatcacatggcagtaaaac |
239 |
Q |
| |
|
|||| |||| || ||||| ||||||||||| || || |||||||||| |||||||| |
|
|
| T |
41413423 |
cacaagaaaatgtgtaaatccacttttgttaaattgtttatcacatgtgagtaaaac |
41413367 |
T |
|
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