View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_high_52 (Length: 315)
Name: NF11854_high_52
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 16386157 - 16385876
Alignment:
| Q |
14 |
cacagacatgtcctactaataacacaacaaaaacacacccttctccatgtcctccatttcaatccaccccaccttttcctttctccaccaccccaggttg |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16386157 |
cacacacatgtcctactaataacacaacaaaaacacacccttctccatgccctccatttcaatccaccccaccttttcctttctccaccaccccaggttg |
16386058 |
T |
|
| Q |
114 |
tggccacccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaaccaaactccact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16386057 |
tggccacccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaacctaactccact |
16385958 |
T |
|
| Q |
214 |
tcaatcatcctctcacctcacaaccccatttcacaactaaacaacaataccaaatgcccaacaacaacatcctcaatcccaaaca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16385957 |
tcaatcatcctctcacctcacaaccccatttcacaacaaaacaacaataccaaatgcccaac---aacatcctcaatcccaaaca |
16385876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 27708600 - 27708505
Alignment:
| Q |
106 |
ccaggttgtggccacccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaa |
201 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| |||||||||| |||||||||||| ||||| ||||||||| ||||||| |||||||||| |||| |
|
|
| T |
27708600 |
ccaggttgtgaccacccttctttccaattaatgtgctcaacccgtcactctttcatcaccataaacaacctctctttctccatcctctctttcaaa |
27708505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University