View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_6 (Length: 810)

Name: NF11854_high_6
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_6
NF11854_high_6
[»] chr1 (28 HSPs)
chr1 (21-439)||(34591698-34592116)
chr1 (553-793)||(34591413-34591653)
chr1 (667-774)||(11853782-11853895)
chr1 (600-745)||(34589241-34589391)
chr1 (468-522)||(34591647-34591701)
chr1 (407-520)||(48548975-48549086)
chr1 (437-520)||(1514354-1514437)
chr1 (417-496)||(7524148-7524227)
chr1 (437-520)||(10324929-10325012)
chr1 (409-520)||(20026127-20026238)
chr1 (420-552)||(6041457-6041583)
chr1 (437-520)||(11049261-11049344)
chr1 (451-589)||(32088580-32088715)
chr1 (407-462)||(35961437-35961492)
chr1 (448-489)||(7790644-7790685)
chr1 (448-537)||(8381961-8382049)
chr1 (406-486)||(1233350-1233430)
chr1 (429-473)||(39673965-39674009)
chr1 (407-462)||(5268288-5268343)
chr1 (407-462)||(34915135-34915190)
chr1 (403-470)||(44786875-44786942)
chr1 (437-488)||(52263638-52263689)
chr1 (411-465)||(213246-213300)
chr1 (419-489)||(38797603-38797672)
chr1 (445-587)||(47321906-47322046)
chr1 (440-489)||(213531-213580)
chr1 (425-470)||(37733613-37733658)
chr1 (454-499)||(43959627-43959672)
[»] chr6 (17 HSPs)
chr6 (407-554)||(34620864-34621010)
chr6 (407-554)||(34748301-34748447)
chr6 (407-554)||(1485107-1485253)
chr6 (437-554)||(2234493-2234610)
chr6 (407-491)||(882726-882810)
chr6 (407-470)||(32888918-32888981)
chr6 (410-520)||(31305811-31305921)
chr6 (407-520)||(30926740-30926852)
chr6 (440-520)||(852543-852623)
chr6 (408-520)||(1499911-1500023)
chr6 (410-470)||(2493975-2494035)
chr6 (419-489)||(4910950-4911020)
chr6 (407-520)||(9505781-9505894)
chr6 (441-513)||(25388095-25388166)
chr6 (445-508)||(34027416-34027479)
chr6 (437-511)||(17225872-17225946)
chr6 (437-486)||(24982338-24982387)
[»] chr7 (14 HSPs)
chr7 (407-587)||(45004965-45005144)
chr7 (407-489)||(40561719-40561801)
chr7 (439-520)||(38123659-38123740)
chr7 (407-519)||(45557377-45557489)
chr7 (476-587)||(15050237-15050348)
chr7 (411-518)||(41788329-41788436)
chr7 (407-520)||(27571873-27571986)
chr7 (429-500)||(44638428-44638499)
chr7 (417-487)||(32295228-32295298)
chr7 (407-489)||(40491620-40491702)
chr7 (407-457)||(26975317-26975367)
chr7 (403-489)||(40795946-40796032)
chr7 (397-489)||(23783151-23783244)
chr7 (407-484)||(44570701-44570778)
[»] chr8 (17 HSPs)
chr8 (407-554)||(16972025-16972171)
chr8 (407-520)||(32927903-32928016)
chr8 (403-520)||(26100103-26100220)
chr8 (415-470)||(14382457-14382512)
chr8 (407-489)||(4950525-4950607)
chr8 (427-465)||(10553153-10553191)
chr8 (407-467)||(8700900-8700960)
chr8 (403-463)||(28805243-28805303)
chr8 (410-518)||(32056378-32056484)
chr8 (436-492)||(32736501-32736557)
chr8 (419-486)||(2924822-2924889)
chr8 (430-489)||(5859047-5859106)
chr8 (445-520)||(13384653-13384728)
chr8 (437-500)||(32101104-32101167)
chr8 (418-524)||(35494997-35495103)
chr8 (407-468)||(11502166-11502227)
chr8 (413-470)||(37641611-37641668)
[»] chr2 (19 HSPs)
chr2 (407-520)||(44439265-44439378)
chr2 (409-492)||(33502276-33502356)
chr2 (407-470)||(15220822-15220885)
chr2 (419-554)||(22535976-22536110)
chr2 (437-520)||(42982555-42982638)
chr2 (407-500)||(4383002-4383095)
chr2 (407-483)||(1976825-1976901)
chr2 (409-520)||(4894120-4894231)
chr2 (436-471)||(38074469-38074504)
chr2 (418-489)||(42741019-42741089)
chr2 (437-470)||(9605247-9605280)
chr2 (417-489)||(37420164-37420238)
chr2 (404-467)||(37519904-37519967)
chr2 (448-486)||(32307129-32307167)
chr2 (448-486)||(32798510-32798548)
chr2 (403-469)||(40401600-40401666)
chr2 (407-552)||(3476390-3476535)
chr2 (419-468)||(11504035-11504084)
chr2 (419-520)||(33019129-33019230)
[»] chr4 (17 HSPs)
chr4 (437-520)||(10185205-10185288)
chr4 (437-554)||(32818361-32818477)
chr4 (445-520)||(33843988-33844063)
chr4 (439-512)||(4243406-4243479)
chr4 (409-470)||(25319109-25319170)
chr4 (410-470)||(27096562-27096622)
chr4 (443-487)||(32100336-32100380)
chr4 (430-502)||(39386662-39386734)
chr4 (401-468)||(17898083-17898150)
chr4 (407-486)||(22683909-22683988)
chr4 (411-525)||(37439151-37439263)
chr4 (408-520)||(22250237-22250349)
chr4 (403-470)||(28178802-28178869)
chr4 (407-470)||(33843772-33843835)
chr4 (418-489)||(41751244-41751315)
chr4 (441-496)||(47596296-47596351)
chr4 (440-500)||(31012732-31012793)
[»] scaffold0361 (1 HSPs)
scaffold0361 (407-489)||(14075-14157)
[»] chr3 (16 HSPs)
chr3 (403-520)||(27499319-27499435)
chr3 (409-489)||(46853497-46853577)
chr3 (407-520)||(3776533-3776646)
chr3 (439-492)||(4526171-4526224)
chr3 (407-520)||(35264372-35264485)
chr3 (407-552)||(37334995-37335139)
chr3 (433-520)||(30300985-30301073)
chr3 (436-492)||(37703138-37703194)
chr3 (429-486)||(53906670-53906727)
chr3 (417-489)||(27266765-27266837)
chr3 (448-554)||(35058339-35058445)
chr3 (407-554)||(51285547-51285694)
chr3 (407-489)||(35253428-35253510)
chr3 (440-554)||(36302161-36302274)
chr3 (407-489)||(41596110-41596192)
chr3 (419-552)||(25359547-25359679)
[»] chr5 (11 HSPs)
chr5 (407-467)||(117457-117517)
chr5 (445-489)||(10898763-10898807)
chr5 (441-492)||(8506701-8506752)
chr5 (410-489)||(34443017-34443096)
chr5 (430-500)||(42858139-42858209)
chr5 (403-492)||(35108278-35108367)
chr5 (445-554)||(36639915-36640023)
chr5 (429-486)||(37886021-37886078)
chr5 (437-520)||(2937910-2937993)
chr5 (445-496)||(18851081-18851132)
chr5 (420-489)||(15368515-15368584)
[»] scaffold0168 (1 HSPs)
scaffold0168 (437-552)||(31806-31923)
[»] scaffold0314 (1 HSPs)
scaffold0314 (419-492)||(17172-17245)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Complemental strand, 34592116 - 34591698
Alignment:
Q  21 caactctagccactatggcgattcttgcgatcagtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34592116 caactctagccactatggcgattcttgcgatcagtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgt 34592017  T
Q  121 acactacagttaagattaatatatgtatagtaacgagaaaaaagtaagagtggtggtaactagtaagatagtaaaaatgtcacaagttaaaacagtgttt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34592016 acactacagttaagattaatatatgtatagtaacgagaaaaaagtaagtgtggtggtaactagtaagatagtaaaaaggtcacaagttaaaacagtgttt 34591917  T
Q  221 tttccttgacagagtgatgacattacaagttaaaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgttt 320  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34591916 tttccttgacagagtgatgacattaaaagttaaaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgctt 34591817  T
Q  321 atgcgtacgtgcatgtctgtttgtttcagcaatgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaa 420  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591816 atgcgtacgtgcatgtctgtttggttcagcgatgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaa 34591717  T
Q  421 agtgattcatgtttcaata 439  Q
    |||||||||||||||||||    
T  34591716 agtgattcatgtttcaata 34591698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 553 - 793
Target Start/End: Complemental strand, 34591653 - 34591413
Alignment:
Q  553 cttcatgagagcaacacaacaagtcaaaatcaattttgtgtgagggtagtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattg 652  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591653 cttcatgagagcaacaaaacaagtcaaaatcaattttgtgtgagggtagtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattg 34591554  T
Q  653 atcaacatctaaaaaggcttattgtacacgtgaaactaacatctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaacagaatgat 752  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591553 atcaacatctaaaaaggcttattgtacacatgaaactaacatctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaacagaatgat 34591454  T
Q  753 acaactaacaattaactaacaatagatatgatgtatcactt 793  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34591453 acaactaacaattaactaacaatagatatgatgtatcactt 34591413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 667 - 774
Target Start/End: Complemental strand, 11853895 - 11853782
Alignment:
Q  667 aggcttattgtacacgtgaaactaacatctaactaacttgcttgtgatgcaagctat------ataacaaactaaccaataaacagaatgatacaactaa 760  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||       || ||||||||| || |||||||||||| |||||||    
T  11853895 aggcttattgtacaagagaaactaccatctaactaacttgcttgtgatgcaagccatctaccattaccaaactaactaacaaacagaatgattcaactaa 11853796  T
Q  761 caattaactaacaa 774  Q
    ||||||||||||||    
T  11853795 caattaactaacaa 11853782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 600 - 745
Target Start/End: Complemental strand, 34589391 - 34589241
Alignment:
Q  600 agtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattgatcaacatct-----aaaaaggcttattgtacacgtgaaactaacat 694  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||| || |||||  | |     | | || || |||||||| ||||||||| |||    
T  34589391 agtatgaaggtagaagaaagattttggtgaaaatgttcaactgaatattttttatcaagttatggcttatatagactaattgtacaagtgaaactaccat 34589292  T
Q  695 ctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaaca 745  Q
    | |||||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  34589291 caaactaatttgcttgtgttgcaagctatctaacaaactaaccaacaaaca 34589241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 468 - 522
Target Start/End: Complemental strand, 34591701 - 34591647
Alignment:
Q  468 aatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatg 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591701 aatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatg 34591647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 48548975 - 48549086
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||  ||| || |||||||||||| || ||| | | ||| |    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataa--atgagtttaaaaatcaattctagaatcagaagctac 48549072  T
Q  507 aatttctagcttca 520  Q
    ||||||||||||||    
T  48549073 aatttctagcttca 48549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 1514437 - 1514354
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||||||||||| |||||| ||| ||| ||| | |||||||||    
T  1514437 atacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttca 1514354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 7524227 - 7524148
Alignment:
Q  417 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 496  Q
    |||||||||||  |||||  | ||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||    
T  7524227 gtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataat 7524148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 10324929 - 10325012
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||| ||||||||||||||  |||||||||| || ||||||||||||||| || ||| ||| ||| ||||||||| |||||    
T  10324929 atacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttca 10325012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 520
Target Start/End: Original strand, 20026127 - 20026238
Alignment:
Q  409 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 508  Q
    ||||||| |||| |||||| |||||  | ||||||||  ||||||||| ||||||||||||| || ||||  ||||||||| || | ||||| |||| ||    
T  20026127 agttgaaggtaaggtgattaatgttcaagtacatttacataaaagtgaattgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaa 20026226  T
Q  509 tttctagcttca 520  Q
    ||||||||||||    
T  20026227 tttctagcttca 20026238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 420 - 552
Target Start/End: Complemental strand, 6041583 - 6041457
Alignment:
Q  420 aagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttc 519  Q
    |||||||| ||||||  ||||||  ||||||||||||||| |||||||||| || || |||||| ||||| || ||| ||| ||||||| ||||||||||    
T  6041583 aagtgatttatgtttggatacat--atgtaaaagtgagttaaacaataaat-tgagtctaaaaaacaattctagaatcaaaggcttcaaattctagcttc 6041487  T
Q  520 atgtattaatcaattctgtacgcaaaatcaatt 552  Q
    |   || ||| |||| |||| ||||||||||||    
T  6041486 a---atcaatgaattttgtaggcaaaatcaatt 6041457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 11049344 - 11049261
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||| | |||||||||| |||||| |||||| || |||||||||||||||||| ||| ||| ||| ||| | |||||||||    
T  11049344 atacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttca 11049261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 451 - 589
Target Start/End: Original strand, 32088580 - 32088715
Alignment:
Q  451 aagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaatcaa 550  Q
    |||||||||||||||||||| |  |||||||||||| |||||  || ||| |||  || | ||||||||| ||   |||||||| |||| | ||||||||    
T  32088580 aagtgagttgaacaataaatttcagtgtaaaaatcactttta--atcaaaagctcgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 32088676  T
Q  551 ttcttcatgagagcaacacaacaagtcaaaatcaatttt 589  Q
    |||| | ||||||||||  |||| |||||||||||||||    
T  32088677 ttctacttgagagcaaccaaacatgtcaaaatcaatttt 32088715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 35961492 - 35961437
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 462  Q
    ||||||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||||    
T  35961492 tgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 7790644 - 7790685
Alignment:
Q  448 taaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 7790685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 537
Target Start/End: Complemental strand, 8382049 - 8381961
Alignment:
Q  448 taaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctg 537  Q
    ||||||||||||||||||||||  ||  |||||||||||||| || || || | ||| ||||||||||||||| |||  |||||||||||    
T  8382049 taaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaagta-gaatcaattctg 8381961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 406 - 486
Target Start/End: Complemental strand, 1233430 - 1233350
Alignment:
Q  406 atgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    ||||||| || ||||| | ||| ||||||  ||||||| |||| |||||||||| |||||||||| || ||||||||||||    
T  1233430 atgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 39674009 - 39673965
Alignment:
Q  429 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatg 473  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  39674009 atgtttgaatatacttatgtaaaagtgagttgaacaataaatatg 39673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 5268343 - 5268288
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 462  Q
    ||||||||| |||||||||||  ||||| |||| ||| ||||||||||||||||||    
T  5268343 tgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 34915190 - 34915135
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 462  Q
    ||||||| | ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  34915190 tgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 44786875 - 44786942
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||||||||| ||||| ||||| |||||  |||||||| |||||||||||| || ||||| ||||    
T  44786875 aaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtgaattcaacaacaaat 44786942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 488
Target Start/End: Original strand, 52263638 - 52263689
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaat 488  Q
    ||||||| |||||||| |||||| |||||||||| || ||||||||||||||    
T  52263638 atacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 213246 - 213300
Alignment:
Q  411 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaa 465  Q
    ||||| ||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 38797603 - 38797672
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| ||||||  ||||||| || |||||||||||||||| |||||| || |||| ||||||||||    
T  38797603 aaagtgatttatgtttgcatacatt-atttaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 38797672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 587
Target Start/End: Original strand, 47321906 - 47322046
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaa 544  Q
    |||||||||||| |||||| |||||| || || | |||||||||| || |||||||  || ||| ||||||||||| ||| ||||||||| |  | |||     
T  47321906 atgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaa-actgcaaattctagcttcaagta-taatcaattatagaagcag 47322003  T
Q  545 aatcaattcttcatgagagcaacacaacaagtcaaaatcaatt 587  Q
    |||||||||| |  || | ||||| |||| |||||||||||||    
T  47322004 aatcaattctactcgacaacaacaaaacatgtcaaaatcaatt 47322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 489
Target Start/End: Original strand, 213531 - 213580
Alignment:
Q  440 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||| ||||||||||||||||||||| |||| || || ||||||||||||    
T  213531 cattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaatt 213580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 470
Target Start/End: Original strand, 37733613 - 37733658
Alignment:
Q  425 attcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    |||||||||| |||||||||||||| || ||||||||| |||||||    
T  37733613 attcatgtttgaatacatttatgtataaatgagttgaataataaat 37733658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 43959672 - 43959627
Alignment:
Q  454 tgagttgaacaataaatatgggtgtaaaaatcaattttataattaa 499  Q
    |||||| |||||||||| || || ||||||||||||||||||||||    
T  43959672 tgagttaaacaataaatttgagtctaaaaatcaattttataattaa 43959627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 407 - 554
Target Start/End: Complemental strand, 34621010 - 34620864
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || ||| | | |||      
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34620911  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 554  Q
     |||||||||||||||||  ||||||||| | | ||||||| ||||||    
T  34620910 gatttctagcttcatgta-gaatcaattccggaggcaaaattaattct 34620864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 407 - 554
Target Start/End: Complemental strand, 34748447 - 34748301
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || ||| | | |||      
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34748348  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 554  Q
     |||||||||||||||||  ||||||||| | | ||||||| ||||||    
T  34748347 gatttctagcttcatgta-gaatcaattccggaggcaaaattaattct 34748301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 407 - 554
Target Start/End: Original strand, 1485107 - 1485253
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    |||||| |||||  ||||||| | ||||  ||||| |||||||||||||||||||||||||||| || |||| |||||||||| || ||| ||| ||| |    
T  1485107 tgagtttaaagttgagtgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctcc 1485206  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 554  Q
    ||||||||| |||| |||  ||||||||||  | ||||||| ||||||    
T  1485207 aatttctagattcaagta-gaatcaattctaaaggcaaaattaattct 1485253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 437 - 554
Target Start/End: Complemental strand, 2234610 - 2234493
Alignment:
Q  437 atacatttatgtaaaagtgagttgaac-aataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattc 535  Q
    |||||||||||||| |||||||||||| ||||||| || |||| |||||||||| || ||| ||| |||||| ||| |||||||| || | ||||||||     
T  2234610 atacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagt-tgaatcaattt 2234512  T
Q  536 tgtacgcaaaatcaattct 554  Q
    || | ||||||||||||||    
T  2234511 tgaaggcaaaatcaattct 2234493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 882810 - 882726
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttt 491  Q
    ||||||||| ||||| ||||| ||||||  ||||||| ||| ||||||||||| |||||||||| ||  ||||||||||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttt 882726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 32888918 - 32888981
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    |||||||||  |||| ||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaat 32888981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 520
Target Start/End: Original strand, 31305811 - 31305921
Alignment:
Q  410 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaat 509  Q
    |||||| ||||| | ||| ||||||  ||| ||| ||||||||||||||||| |||||||| || ||||| ||||||||| || ||| ||| ||| ||||    
T  31305811 gttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaat 31305910  T
Q  510 ttctagcttca 520  Q
    || ||||||||    
T  31305911 ttttagcttca 31305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 30926740 - 30926852
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||| ||| ||||| ||||| |||||| |||| ||| ||| |||||| | ||||||||||||| || ||||||||||||||| || ||| |||  || |    
T  30926740 tgagtagaaggtaaaatgatttatgtttgaatatattcatgcaaaagtaa-ttgaacaataaatttgagtgtaaaaatcaattctagaataaaaaactcc 30926838  T
Q  507 aatttctagcttca 520  Q
    ||||||||||||||    
T  30926839 aatttctagcttca 30926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 852623 - 852543
Alignment:
Q  440 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    |||| ||||||||||||||| ||||||| || |||||||||||||||||| || ||| | |  || |||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttca 852543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 520
Target Start/End: Complemental strand, 1500023 - 1499911
Alignment:
Q  408 gagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttca 507  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||||||||||  | ||| |||| || || | ||||| ||||||||| | |||  |||||    
T  1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgagtctagcaacaaatttgagttttaaaattaattttatactaaaaaacttca 1499924  T
Q  508 atttctagcttca 520  Q
    |||| ||||||||    
T  1499923 atttttagcttca 1499911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 2493975 - 2494035
Alignment:
Q  410 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  2493975 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 2494035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 4911020 - 4910950
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||| |||||| ||  ||| ||||||||||    
T  4911020 aaagtgatttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaatt 4910950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 9505894 - 9505781
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| | ||||||||  |||||   ||| ||| ||||||||||| |||||||||||||| || || |||||||||||  || ||| ||| ||| |    
T  9505894 tgagttgaaggcaaagtgatatatgttattatatattcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctcc 9505795  T
Q  507 aatttctagcttca 520  Q
    |||||||| |||||    
T  9505794 aatttctatcttca 9505781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 441 - 513
Target Start/End: Complemental strand, 25388166 - 25388095
Alignment:
Q  441 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttct 513  Q
    |||||||||||||||||||| ||||||||| || |||| |||||||||| || ||| |||  |||||||||||    
T  25388166 atttatgtaaaagtgagttg-acaataaatttgagtgtcaaaatcaattctaaaatcaaagacttcaatttct 25388095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 508
Target Start/End: Original strand, 34027416 - 34027479
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 508  Q
    |||||| ||||||||||| ||||||| || ||||||||||||||| || ||| ||| |||||||    
T  34027416 atgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagcttcaa 34027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 511
Target Start/End: Complemental strand, 17225946 - 17225872
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaattt 511  Q
    ||||||| |||||||| |||||||||| |||||| ||  |||||||||||||| || ||| ||| ||| ||||||    
T  17225946 atacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaattt 17225872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 24982387 - 24982338
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    ||||||| |||||||||| |||||||||| |||| || ||||||||||||    
T  24982387 atacattcatgtaaaagtaagttgaacaaaaaatttgagtgtaaaaatca 24982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 407 - 587
Target Start/End: Complemental strand, 45005144 - 45004965
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| |||||  |||| ||||||  ||| |||||||||||||||||||||| ||||||| || |||  || ||||||| |||||| |||  || |    
T  45005144 tgagttgaaggtaaaccgattgatgttttgatatatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctcc 45005045  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattcttcatgagagcaacacaacaagtcaaaatcaatt 587  Q
    ||||| |||||||| |||  ||||||||||| | ||||||||||||||    |||||||||  |||| |||||||||||||    
T  45005044 aatttttagcttcaagta-gaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 40561719 - 40561801
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||| || || ||||| |||| ||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaatt 40561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 439 - 520
Target Start/End: Original strand, 38123659 - 38123740
Alignment:
Q  439 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||||||| || ||||| | ||| |||||||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttca 38123740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 407 - 519
Target Start/End: Complemental strand, 45557489 - 45557377
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| |||||||||||  |||||  ||||||| ||||||||||||||||| | | |||| || ||||||||||||||  || ||||||| ||| |    
T  45557489 tgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctac 45557390  T
Q  507 aatttctagcttc 519  Q
    |  ||||||||||    
T  45557389 agattctagcttc 45557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 15050348 - 15050237
Alignment:
Q  476 tgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaatcaattcttcatgagagcaacacaacaag 575  Q
    ||||||||||||||||| |||  || |||  |||||||||||||| |  | ||||||||||  | |||||||||||||| |||||||| |||  |||| |    
T  15050348 tgtaaaaatcaattttagaatggaaagctctaatttctagcttcaagattaaatcaattctacaagcaaaatcaattctacatgagagtaaccaaacagg 15050249  T
Q  576 tcaaaatcaatt 587  Q
    ||||||||||||    
T  15050248 tcaaaatcaatt 15050237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 518
Target Start/End: Complemental strand, 41788436 - 41788329
Alignment:
Q  411 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatt 510  Q
    ||||| ||||||||||| ||||||  ||||||| || |||||||||||||||||  |||| || |||| |||||||||| || | | ||| | |||||||    
T  41788436 ttgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatt 41788337  T
Q  511 tctagctt 518  Q
    ||||||||    
T  41788336 tctagctt 41788329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 27571986 - 27571873
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    |||||| || ||||| ||||| ||| ||  ||||||||||||||| |||||||||| ||||||  || |||| |||||||||| || ||| ||| ||| |    
T  27571986 tgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctcc 27571887  T
Q  507 aatttctagcttca 520  Q
    |||||||| |||||    
T  27571886 aatttctaacttca 27571873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 429 - 500
Target Start/End: Original strand, 44638428 - 44638499
Alignment:
Q  429 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 500  Q
    |||||| ||||||||||||||||   ||||||||  |||||| || ||||||||||||||||| ||||||||    
T  44638428 atgtttaaatacatttatgtaaatacgagttgaattataaatttgtgtgtaaaaatcaattttttaattaaa 44638499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 32295298 - 32295228
Alignment:
Q  417 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaa 487  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||  |||||| || |||| | ||||||    
T  32295298 gtaaagtgatttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 40491702 - 40491620
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| ||||||||||| || |||  ||||||| ||||||||||||||| |||  ||||| || |||||||| ||||||    
T  40491702 tgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaatt 40491620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 26975317 - 26975367
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgag 457  Q
    ||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||    
T  26975317 tgagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 26975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 40795946 - 40796032
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||| ||||| |||||||| || ||| ||  ||||||| |||||||||||| ||||| | ||||| || |||| ||||||||||    
T  40795946 aaaatgaattgaaggtaaagtggtttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaatt 40796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 489
Target Start/End: Complemental strand, 23783244 - 23783151
Alignment:
Q  397 tggttgaaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgt-aaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| |||||| || |||||| |||| |||||| ||||  ||||||| ||||||  |||||||||||||| || | ||||| |||||||    
T  23783244 tggttgaaactgagttaaatgtaaagcgatttatgtttgaataagtttatgtaaaaagtaggttgaacaataaatttgagggtaaagatcaatt 23783151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 44570701 - 44570778
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 484  Q
    ||||||||| ||||||||||| |||||| | || ||| || ||||||||||||||  ||||||| ||  |||||||||    
T  44570701 tgagttgaatgtaaagtgatttatgtttgattatattcatataaaagtgagttgataaataaatttgaatgtaaaaat 44570778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 554
Target Start/End: Original strand, 16972025 - 16972171
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||| |||||  ||||| |||||||| |||||||||||| ||||||||||||| || || |||||||||||| || |||||||  || |    
T  16972025 tgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactac 16972124  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 554  Q
    || |||||||||||  ||  |||||| |||| | ||||||||||||||    
T  16972125 aaattctagcttcaaata-caatcaactctgaaggcaaaatcaattct 16972171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 32928016 - 32927903
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| | |||||||||  |||||  ||||||| ||||||||||||||||||| |||||| || |||||||||| |||| |||||| ||| ||| |    
T  32928016 tgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctac 32927917  T
Q  507 aatttctagcttca 520  Q
    || | |||||||||    
T  32927916 aaatcctagcttca 32927903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 26100103 - 26100220
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 502  Q
    |||| |||||||| ||||||  |||  |||||  || |||||||||||||||||||||||| |||||| || ||||||||||||||| || ||| ||| |    
T  26100103 aaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaag 26100202  T
Q  503 cttcaatttctagcttca 520  Q
    || ||| | |||||||||    
T  26100203 ctacaaatcctagcttca 26100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 14382512 - 14382457
Alignment:
Q  415 aagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  14382512 aagtaaactgatacatgtttcgatacttttatgtaaaagtgagttgaacaataaat 14382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 4950607 - 4950525
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| ||||||||||| ||||||  ||| |||||||  ||||||||||||| ||||||| |  |||||||||| ||||    
T  4950607 tgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaatttaagtgtaaaaattaatt 4950525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 10553153 - 10553191
Alignment:
Q  427 tcatgtttcaatacatttatgtaaaagtgagttgaacaa 465  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10553153 tcatgtttaaatacatttatgtaaaagtgagttgaacaa 10553191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 8700960 - 8700900
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 467  Q
    ||||||||| ||||||| ||| |||||| |||| |||  ||||||||||||||||||||||    
T  8700960 tgagttgaaggtaaagtaatttatgtttaaataaattcttgtaaaagtgagttgaacaata 8700900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 28805303 - 28805243
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaac 463  Q
    ||||||| ||||||||||| ||||| |||||| |||||||| || ||||||| ||||||||    
T  28805303 aaaatgatttgaaagtaaaatgatttatgtttgaatacattaatataaaagtaagttgaac 28805243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 518
Target Start/End: Complemental strand, 32056484 - 32056378
Alignment:
Q  410 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaat 509  Q
    |||||||||||||||||  ||| ||  |  |||| |||||||||||||||||||| || || |||||||||||||||||| || || || | ||| ||||    
T  32056484 gttgaaagtaaagtgatctatggttggacgcattcatgtaaaagtgagttgaacagtatat-tgggtgtaaaaatcaattctagaa-tagaagctccaat 32056387  T
Q  510 ttctagctt 518  Q
    |||||||||    
T  32056386 ttctagctt 32056378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 32736557 - 32736501
Alignment:
Q  436 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    |||||||| |||||||||||| |||||| |||||| || |||||||||| |||||||    
T  32736557 aatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatttta 32736501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 2924889 - 2924822
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    ||||||| | ||||||  |||||| |||||||||||||||||| ||||| || || ||||||||||||    
T  2924889 aaagtgagttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaatca 2924822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 489
Target Start/End: Original strand, 5859047 - 5859106
Alignment:
Q  430 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||| ||| |||| ||||||||||||||||||| |||||  || |||||||||||||||    
T  5859047 tgtttgaatgcattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaatt 5859106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 13384653 - 13384728
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||||||||||||||| |||||| || |||| |||||||||| || ||| ||| ||| ||| || ||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttca 13384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 32101167 - 32101104
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 500  Q
    ||||||||||||||||||||||||||| |||||| ||  | | ||||| ||||||| |||||||    
T  32101167 atacatttatgtaaaagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaa 32101104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 35495103 - 35494997
Alignment:
Q  418 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagct 517  Q
    ||||||||||  |||||  ||| ||| |||||||||| |||||||| ||| || || ||||||||| ||||| || ||| ||| ||| ||| | ||||||    
T  35495103 taaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagct 35495004  T
Q  518 tcatgta 524  Q
    |||||||    
T  35495003 tcatgta 35494997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 11502166 - 11502227
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 468  Q
    |||||| |||||||| ||||| || ||| |||| ||||| ||||||||||||| ||||||||    
T  11502166 tgagtttaaagtaaaatgatttattttttaatatatttaagtaaaagtgagttaaacaataa 11502227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 470
Target Start/End: Complemental strand, 37641668 - 37641611
Alignment:
Q  413 gaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||||||||| | ||||||  ||| |||||  |||||||||||||||||||||||    
T  37641668 gaaagtaaagtgacttatgtttggataaatttacctaaaagtgagttgaacaataaat 37641611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 44439378 - 44439265
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    |||||| || ||||||||||| ||||||  |||  ||||||||||||||||||||||||||||| || |||| ||||||||||||| ||| ||| ||| |    
T  44439378 tgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctcc 44439279  T
Q  507 aatttctagcttca 520  Q
    || || ||||||||    
T  44439278 aaattttagcttca 44439265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 33502356 - 33502276
Alignment:
Q  409 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    ||||||| |||||||||||  |||||  |||||||   ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33502356 agttgaatgtaaagtgatttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaatttta 33502276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 15220822 - 15220885
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| |||||||||||||||||||||    
T  15220822 tgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaat 15220885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 554
Target Start/End: Complemental strand, 22536110 - 22535976
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 518  Q
    |||||||||  |||||  |||||||||||||||| |||||| ||| ||||||||| ||| |||||| |||| || ||| ||| ||||||| |||||  ||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaatt 22536011  T
Q  519 catgtattaatcaattctgtacgcaaaatcaattct 554  Q
    || |||  ||||||||||  | ||||||||||||||    
T  22536010 caagta-gaatcaattctaaaggcaaaatcaattct 22535976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 42982638 - 42982555
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||| |||||||||||||||| | ||||||| || ||||||||||||||| |  ||| ||| ||| |||||||||||||||    
T  42982638 atacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttca 42982555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 500
Target Start/End: Complemental strand, 4383095 - 4383002
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 500  Q
    |||||||||||||| ||| || ||| ||| ||| ||||||||||| ||| ||||||| |||||| | ||||||| |||||||| || |||||||    
T  4383095 tgagttgaaagtaatgtggtttatgattctatatatttatgtaaatgtgggttgaactataaattttggtgtaataatcaattctagaattaaa 4383002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 483
Target Start/End: Original strand, 1976825 - 1976901
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaa 483  Q
    ||||||||| |||||| || | ||||||  ||||||| ||||||||||||||| |||||||||| || |||||||||    
T  1976825 tgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaa 1976901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 409 - 520
Target Start/End: Original strand, 4894120 - 4894231
Alignment:
Q  409 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 508  Q
    ||||||| ||||||||||| ||||||  ||||||| || ||||||||| ||||| ||||||| || || ||| |||||||| || ||| ||| ||| | |    
T  4894120 agttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaagctacga 4894219  T
Q  509 tttctagcttca 520  Q
    ||||||| ||||    
T  4894220 tttctagtttca 4894231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 436 - 471
Target Start/End: Complemental strand, 38074504 - 38074469
Alignment:
Q  436 aatacatttatgtaaaagtgagttgaacaataaata 471  Q
    ||||||||||||||||||||||||||||||||||||    
T  38074504 aatacatttatgtaaaagtgagttgaacaataaata 38074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 42741089 - 42741019
Alignment:
Q  418 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||||  ||||| |||||||| |||||||||||||||| ||| ||||| || |||||||||||||||    
T  42741089 taaagtgatttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaatt 42741019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 9605280 - 9605247
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||||||||||||||||||||||||||||||    
T  9605280 atacatttatgtaaaagtgagttgaacaataaat 9605247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 37420164 - 37420238
Alignment:
Q  417 gtaaagtgattcatgtttcaatacatt--tatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||| ||| ||||||||||| ||   || |||||||||||||||| ||||||| || |||||||||||||||    
T  37420164 gtaaagtaatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaatt 37420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 467
Target Start/End: Complemental strand, 37519967 - 37519904
Alignment:
Q  404 aaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 467  Q
    |||||| |||||||||||||| || |  ||| ||||||||||| |||||| |||||||||||||    
T  37519967 aaatgatttgaaagtaaagtggtttacatttgaatacatttatttaaaagcgagttgaacaata 37519904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 32307167 - 32307129
Alignment:
Q  448 taaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32307167 taaaagtgagttgaacaataaatataagtgtaaaaatca 32307129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 32798510 - 32798548
Alignment:
Q  448 taaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32798510 taaaagtgagttgaacaataaatataagtgtaaaaatca 32798548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 40401600 - 40401666
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaa 469  Q
    ||||||||||||| ||| | | ||| ||||||  ||||||| |||||||||| ||||||||||||||    
T  40401600 aaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 552
Target Start/End: Original strand, 3476390 - 3476535
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    |||| ||||||| |||||||  ||||||  ||||||||||  | |||| |||||||||||| || ||  ||||||||| |||| || ||| ||| |||      
T  3476390 tgagctgaaagtgaagtgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtaaaaataaattctagaatcaaaagctct 3476489  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaatt 552  Q
    ||||| |||||| | ||   ||||||||||| | ||||||||||||    
T  3476490 aatttttagctttaagttagaatcaattctggaggcaaaatcaatt 3476535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 11504035 - 11504084
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 468  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  11504035 aaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataa 11504084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 520
Target Start/End: Original strand, 33019129 - 33019230
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 518  Q
    |||||||||  |||||  || |||| ||||||||||||||||||| |||||| |  |||| |||||||||| || ||  ||| ||| ||| |||||||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T
Q  519 ca 520  Q
    ||    
T  33019229 ca 33019230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 10185288 - 10185205
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    ||||||| ||||||||||||||| |||||||||| || ||||||| |||||||||| ||| ||| ||||||||||||| |||||    
T  10185288 atacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttca 10185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 554
Target Start/End: Original strand, 32818361 - 32818477
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattct 536  Q
    ||||||| |||||||||| |||||||| |||||| || ||| ||||||||||| || ||| ||| ||| ||| |||||||||||  ||  ||||||||||    
T  32818361 atacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaata-gaatcaattct 32818459  T
Q  537 gtacgcaaaatcaattct 554  Q
    | | ||||||||||||||    
T  32818460 ggaggcaaaatcaattct 32818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 33844063 - 33843988
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    |||||||| | ||||||||||||||| || |||| ||||||||||||| ||| ||| ||| |||||||||||||||    
T  33844063 atgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttca 33843988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 439 - 512
Target Start/End: Complemental strand, 4243479 - 4243406
Alignment:
Q  439 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttc 512  Q
    ||||| |||||||||||||| ||||||||||| || ||||||||||||||| || ||| ||| ||| |||||||    
T  4243479 acattgatgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 25319170 - 25319109
Alignment:
Q  409 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||| |||||||  || ||||||| ||||||||| ||||||||||||||||||||||||    
T  25319170 agttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaacaataaat 25319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 27096562 - 27096622
Alignment:
Q  410 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  27096562 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 27096622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 32100380 - 32100336
Alignment:
Q  443 ttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaa 487  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  32100380 ttatgtaaaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 39386734 - 39386662
Alignment:
Q  430 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 502  Q
    ||||| |||| ||| |||||||||||||||||||  |||||||| |||| |||||||||| || |||||||||    
T  39386734 tgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatg 39386662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 17898083 - 17898150
Alignment:
Q  401 tgaaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 468  Q
    ||||| ||||||||| ||||||||||| ||||||  ||| ||||| |||||||||| |||||||||||    
T  17898083 tgaaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaataa 17898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 407 - 486
Target Start/End: Complemental strand, 22683988 - 22683909
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    ||||||||||||||| || || ||||||  | ||||||||||||||| |||||||||||||||| |   |||||||||||    
T  22683988 tgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaaatca 22683909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 37439263 - 37439151
Alignment:
Q  411 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatt 510  Q
    ||||| ||||| | ||| |||||| |||||  ||||||| |||  ||||||||||||||  || ||||||||||||||| || ||||||| |||  ||||    
T  37439263 ttgaaggtaaaataatttatgtttaaatactattatgtataag--agttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatt 37439166  T
Q  511 tctagcttcatgtat 525  Q
    |||||||||| ||||    
T  37439165 tctagcttcaagtat 37439151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 520
Target Start/End: Complemental strand, 22250349 - 22250237
Alignment:
Q  408 gagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttca 507  Q
    |||||||| || |||||||| |  |||  ||||||| |||||||||||| | ||||||||||| || || | |||| |||||| | ||| ||| ||||||    
T  22250349 gagttgaatgtgaagtgatttacatttggatacattcatgtaaaagtgaatcgaacaataaatttgagtattaaaagcaatttcagaatcaaaagcttca 22250250  T
Q  508 atttctagcttca 520  Q
    |||||| ||||||    
T  22250249 atttcttgcttca 22250237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 28178802 - 28178869
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||| ||||||| ||||||||||| ||| |||||||| || || |||| || |||||||||||||||    
T  28178802 aaaattagttgaatgtaaagtgattaatgcttcaatactttaatataaatgtaagttgaacaataaat 28178869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 33843835 - 33843772
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 470  Q
    ||||||| | ||||||||||| ||||||  ||| ||| |||||| |||||||||||||||||||    
T  33843835 tgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaat 33843772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 41751244 - 41751315
Alignment:
Q  418 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||||||||| |||||| |||||||| |||||||| ||| || |||||||||| |  || ||||||||||||    
T  41751244 taaagtgattaatgtttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaaatcaatt 41751315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 47596296 - 47596351
Alignment:
Q  441 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 496  Q
    |||||||||||| || | | |||||||||| || ||||||||||||||||||||||    
T  47596296 atttatgtaaaaatgggctaaacaataaatttgagtgtaaaaatcaattttataat 47596351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 31012732 - 31012793
Alignment:
Q  440 catttatgtaaaagtgagttgaacaataaatatgggtgt-aaaaatcaattttataattaaa 500  Q
    ||||||||||||| |||||||||| ||||||||  |||| ||||||||||| || |||||||    
T  31012732 catttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaa 31012793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 14075 - 14157
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| ||||||||||||| ||||||| || |||||||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaatt 14157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 520
Target Start/End: Original strand, 27499319 - 27499435
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 502  Q
    ||||||| |||||  |||||||||| ||| || |||| ||||| |||||||||| ||||||||||| | |  || | ||||||||||||| ||||||| |    
T  27499319 aaaatgaattgaagataaagtgatttatggtttaatatatttacgtaaaagtgatttgaacaataatt-taagtattaaaatcaattttagaattaaaag 27499417  T
Q  503 cttcaatttctagcttca 520  Q
    |||||||||||| |||||    
T  27499418 cttcaatttctaacttca 27499435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 46853497 - 46853577
Alignment:
Q  409 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||| ||||||||||| ||||    ||| |||||||||||||||||||||||||||||| || |||| ||||||||||    
T  46853497 agttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaatt 46853577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 3776646 - 3776533
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||||||||| ||| ||  ||||||| ||||||||||||||| | ||| |||| || |||||||||| |||| || ||| | | ||| |    
T  3776646 tgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctac 3776547  T
Q  507 aatttctagcttca 520  Q
    ||||||||| ||||    
T  3776546 aatttctagattca 3776533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 4526224 - 4526171
Alignment:
Q  439 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    ||||||||||||||||| ||||||| |||||| || ||||||||||||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaatttta 4526171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 35264372 - 35264485
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||||||||||||| | ||||||   |||||| |||||||| ||| ||||||||||||| |  |||| |||||||||| || ||| ||| |||      
T  35264372 tgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctct 35264471  T
Q  507 aatttctagcttca 520  Q
    ||||||||| ||||    
T  35264472 aatttctagtttca 35264485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 407 - 552
Target Start/End: Original strand, 37334995 - 37335139
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||||||||| |||| | |||||||| || ||||| ||||||||||||| |||    ||||||||||||||| || ||| ||| ||| |    
T  37334995 tgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctac 37335094  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaatt 552  Q
     ||||||| ||||  |||  ||||||||||  | ||||||||||||    
T  37335095 gatttctaacttctagta-aaatcaattctcgaggcaaaatcaatt 37335139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 520
Target Start/End: Original strand, 30300985 - 30301073
Alignment:
Q  433 ttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataatt-aaatgcttcaatttctagcttca 520  Q
    ||||||| ||||||||||||||| |||||||||||||| || |||| |||| ||||| || |||| |||  || |||||||||||||||    
T  30300985 ttcaataaatttatgtaaaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttca 30301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 37703194 - 37703138
Alignment:
Q  436 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    |||| |||||||||||||||| ||||||||||||| || |||||||||| |||||||    
T  37703194 aatatatttatgtaaaagtgaattgaacaataaatttgagtgtaaaaattaatttta 37703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 53906727 - 53906670
Alignment:
Q  429 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    ||||||||||| ||| |||||||||| | ||||||||||||| | |||||||||||||    
T  53906727 atgtttcaatatattcatgtaaaagtaaattgaacaataaatttaggtgtaaaaatca 53906670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 27266765 - 27266837
Alignment:
Q  417 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||||| ||||||  |||  || |||||||||| ||||||||||||||| || |||||||||| ||||    
T  27266765 gtaaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaatt 27266837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 554
Target Start/End: Complemental strand, 35058445 - 35058339
Alignment:
Q  448 taaaagtgagttgaacaataa-atatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaa 546  Q
    ||||||||||||||||||||| || || |||| |||||||||| || ||| ||| |||  ||||||||||| || |||  ||||||||||  | ||||||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagta-gaatcaattcttgaggcaaaa 35058347  T
Q  547 tcaattct 554  Q
    ||||||||    
T  35058346 tcaattct 35058339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 554
Target Start/End: Complemental strand, 51285694 - 51285547
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 506  Q
    ||||||||| ||||||| ||||||| ||  ||||||| ||||||||| | ||| ||||| |||| || ||| ||||||||||| || ||| ||| |||      
T  51285694 tgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaattctagaatcaaaagctgt 51285595  T
Q  507 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 554  Q
     |||| |||||||| || |   |||||| || | ||||||||||||||    
T  51285594 gatttttagcttcaagtttgtgtcaattgtggaggcaaaatcaattct 51285547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 35253428 - 35253510
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||||| || ||||||||||| || |||  | ||| | ||||||||||||||||||  |||||| || |||||||||||||||    
T  35253428 tgagtttaaggtaaagtgatttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaatt 35253510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 554
Target Start/End: Complemental strand, 36302274 - 36302161
Alignment:
Q  440 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgta 539  Q
    |||| |||||||||||||||||||||||||| |  |||  |||||||||| || ||| |||  || |||| ||||||||||  ||  |||||| |||| |    
T  36302274 cattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaata-gaatcaactctgaa 36302176  T
Q  540 cgcaaaatcaattct 554  Q
     ||||||||||||||    
T  36302175 ggcaaaatcaattct 36302161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 41596110 - 41596192
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    ||||||||| |||||||||||  |||||  ||||||| ||| ||||||||||  ||| |||||  || |||||||||||||||    
T  41596110 tgagttgaatgtaaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaatt 41596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 552
Target Start/End: Original strand, 25359547 - 25359679
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 518  Q
    |||||||||  |||||  ||||||| || || |||||| || ||||||||||||| |||| |||||||||| || ||| |||  || ||| ||||| |||    
T  25359547 aaagtgatttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaactt 25359646  T
Q  519 catgtattaatcaattctgtacgcaaaatcaatt 552  Q
    || |||  ||||||||||| | ||| ||||||||    
T  25359647 caagta-gaatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 117457 - 117517
Alignment:
Q  407 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 467  Q
    ||||||||| ||||| ||||||||||||  |||||| |||||||||||||||| |||||||    
T  117457 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 117517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 10898807 - 10898763
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  10898807 atgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 10898763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 8506701 - 8506752
Alignment:
Q  441 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||||    
T  8506701 atttatgtaaaagtgatttgaacaataaatgtgagtgtaaaactcaatttta 8506752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 410 - 489
Target Start/End: Complemental strand, 34443096 - 34443017
Alignment:
Q  410 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||||||||||| | ||| |||||| ||||||||||| ||||||||| ||||| ||||||| ||  ||| ||||||||||    
T  34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtgaattgaaaaataaatttgtttgttaaaatcaatt 34443017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 42858209 - 42858139
Alignment:
Q  430 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 500  Q
    ||||| |||| ||| ||||||||||||||||||| |||||| || |||| |||||||||| || |||||||    
T  42858209 tgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaa 42858139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 492
Target Start/End: Complemental strand, 35108367 - 35108278
Alignment:
Q  403 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    ||||| |||||||| ||||||||||  ||||| |||| | | ||||||| ||| ||||||| |||||| || |||||||||||| |||||    
T  35108367 aaaattagttgaaaataaagtgatttgtgtttgaataaactcatgtaaatgtgtgttgaactataaatttgcgtgtaaaaatcagtttta 35108278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 554
Target Start/End: Complemental strand, 36640023 - 36639915
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaa 544  Q
    ||||||||||||| |||||| ||||| || ||||||||| ||||| || ||||| | ||| ||||||| ||||||| |||  |||| ||| || | ||||    
T  36640023 atgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagta-gaatctattttggaggcaa 36639925  T
Q  545 aatcaattct 554  Q
    ||||||||||    
T  36639924 aatcaattct 36639915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 37886021 - 37886078
Alignment:
Q  429 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 486  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |   |||||||||||    
T  37886021 atgtttgaatacatttgtgtaaaagtgagttgaacaataaatttcaatgtaaaaatca 37886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 2937910 - 2937993
Alignment:
Q  437 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 520  Q
    |||||||  ||||||||| ||||||||| ||||| ||  | |||||||||||| || ||||||| ||||||| |||||| ||||    
T  2937910 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttca 2937993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 18851081 - 18851132
Alignment:
Q  445 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 496  Q
    ||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||    
T  18851081 atgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataat 18851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 15368584 - 15368515
Alignment:
Q  420 aagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 489  Q
    |||||||| |||||| |||||||  |||||||||||| |||||||| | || || ||||||| |||||||    
T  15368584 aagtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatatttgagtgtaaagatcaatt 15368515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 552
Target Start/End: Complemental strand, 31923 - 31806
Alignment:
Q  437 atacatttatgtaaaagtgagttg---aacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaat 533  Q
    ||||||||||||||||||||||||   ||| |||||||||  ||| ||||||||||  ||||| ||| ||| ||| | ||||||||| ||| ||||||||    
T  31923 atacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagta-taatcaat 31825  T
Q  534 tctgtacgcaaaatcaatt 552  Q
    | || | ||| ||||||||    
T  31824 tttggaggcagaatcaatt 31806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 17245 - 17172
Alignment:
Q  419 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 492  Q
    ||||||||| |||||| |||||||| ||| ||| | |||||||| ||||||| |  ||||||||||| ||||||    
T  17245 aaagtgatttatgtttgaatacattaatgaaaacgggagttgaataataaatctcagtgtaaaaatctatttta 17172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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