View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_61 (Length: 292)

Name: NF11854_high_61
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_61
NF11854_high_61
[»] chr1 (4 HSPs)
chr1 (3-276)||(25483794-25484067)
chr1 (3-276)||(25859933-25860206)
chr1 (142-179)||(25604126-25604163)
chr1 (142-179)||(25886231-25886268)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 25483794 - 25484067
Alignment:
Q  3 cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483794 cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga 25483893  T
Q  103 cggttttatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatccccaaagaagatttgaatatggtatg 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  25483894 cggtttgatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaataaacggttttaaaccctaatcccccaagaagatttgaatatggtatg 25483993  T
Q  203 aacaagatttgaaaaggactaaaatcaccttgagcaaataaagaatgatagagaaaatacctgaatgaaaattc 276  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25483994 aacaagatttgaaaaggactaaaatcaccttgagcaaagaaagaatgatagagaaaatacctgaatgaaaattc 25484067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 25860206 - 25859933
Alignment:
Q  3 cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25860206 cagagaccacaaccgagatttatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga 25860107  T
Q  103 cggttttatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatccccaaagaagatttgaatatggtatg 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25860106 cggtttgatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatcccccaagaagatttgaatatggtatg 25860007  T
Q  203 aacaagatttgaaaaggactaaaatcaccttgagcaaataaagaatgatagagaaaatacctgaatgaaaattc 276  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25860006 aacaagatttgaaaaggactaaaatcaccttgagcaaagaaagaatgatagagaaaatacctgaatgaaaattc 25859933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 25604163 - 25604126
Alignment:
Q  142 aaaaaagccctaattaacggttttaaaccctaatcccc 179  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  25604163 aaaaaagccccaattaaaggttttaaaccctaatcccc 25604126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 25886268 - 25886231
Alignment:
Q  142 aaaaaagccctaattaacggttttaaaccctaatcccc 179  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  25886268 aaaaaagccccaattaaaggttttaaaccctaatcccc 25886231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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