View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_62 (Length: 291)
Name: NF11854_high_62
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 16521657 - 16521918
Alignment:
| Q |
15 |
cagagaaggacaaagtagtttcaactgactgaagaataatacatgagaattcataagcttaataattattatatataaacaaatccctgcatttctcact |
114 |
Q |
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| T |
16521657 |
cagagaaggacaaagtagttttaactgattgaagaataatacatgagaattcataagcttaataattattgtatataaacaaatccctgcatttcttact |
16521756 |
T |
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| Q |
115 |
agggtacttttgtctttacttttatagattgattaattcatgttagactagtttacttgcaatgcaagttaggtggttacaaaaacagtttcagttttgt |
214 |
Q |
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| T |
16521757 |
aaggtacttttgtctttacttttatagattgattaattcatgttagactagtttacttgcaatgcaagttaggtggttacaaaaacagtttcagttttgt |
16521856 |
T |
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| Q |
215 |
gggattagcaattagcaatctctgcataattctcatttttcagttttgtgttaattcctttt |
276 |
Q |
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| T |
16521857 |
gggattagcaattagcaatctctgcataattctcatttttcagttttgtgttaattcctttt |
16521918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 38540975 - 38541032
Alignment:
| Q |
136 |
ttatagattgattaattcatgttagactagtttacttgcaatgcaagttaggtggtta |
193 |
Q |
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| T |
38540975 |
ttattgattgattaattcatgttagactagtttacttactatgcaagtcaagtggtta |
38541032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 38563193 - 38563250
Alignment:
| Q |
136 |
ttatagattgattaattcatgttagactagtttacttgcaatgcaagttaggtggtta |
193 |
Q |
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| T |
38563193 |
ttattgattgattaattcatgttagactagtttacttactatgcaagtcaagtggtta |
38563250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 35538796 - 35538737
Alignment:
| Q |
148 |
taattcatgttagactagtttacttgcaatgcaagttaggtggttacaaaaacagtttca |
207 |
Q |
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| T |
35538796 |
taattcatgttagatttgtttacttactatgcaagttagatggttagaaaaacagtttca |
35538737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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