View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_63 (Length: 289)

Name: NF11854_high_63
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_63
NF11854_high_63
[»] chr5 (2 HSPs)
chr5 (14-219)||(2584122-2584327)
chr5 (43-100)||(8462972-8463029)
[»] chr2 (2 HSPs)
chr2 (43-99)||(18694444-18694500)
chr2 (50-97)||(34557304-34557351)
[»] chr8 (1 HSPs)
chr8 (52-95)||(10340281-10340324)
[»] chr3 (1 HSPs)
chr3 (43-96)||(41877220-41877273)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 2584122 - 2584327
Alignment:
Q  14 cttaggaaattgatttttctctttggtttctcattcatcgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatgtccaatataaattatctc 113  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  2584122 cttaggaaattgatttttcccttttgtttctcattcatcgatcttaaaagtgcatgcgtgagttaacttacgttgaaaaatgtccaatgtaaattatctc 2584221  T
Q  114 atgttnnnnnnngtcgaacgtaagataactcacaccagataattttcggtaaatgaacaattttaaaaggaagaatatcaatttttatatccttatagag 213  Q
    |||||       ||| ||||| |||||| |||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||||    
T  2584222 atgttaaaaaaagtcaaacgtgagataattcacacgagataattttcagtaaatgaacaattttgaaagaaagaatatcaatttttatgtcctcatagag 2584321  T
Q  214 ttatag 219  Q
    ||||||    
T  2584322 ttatag 2584327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 8462972 - 8463029
Alignment:
Q  43 ctcattcatcgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatgtccaa 100  Q
    |||||||| ||||| |||||||||||||| ||||||||||| | ||||||||||||||    
T  8462972 ctcattcaccgatcgtaaaagtgcatgcgcgagttaactcatgctgaaaaatgtccaa 8463029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 18694500 - 18694444
Alignment:
Q  43 ctcattcatcgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatgtcca 99  Q
    |||||||||| || |||||||||  |||||||||||||||||| |||||||||||||    
T  18694500 ctcattcatcaattttaaaagtgtctgcgtgagttaactcacgctgaaaaatgtcca 18694444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 34557351 - 34557304
Alignment:
Q  50 atcgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatgtc 97  Q
    |||||||||||||||||  | ||||||||||||||| |||||||||||    
T  34557351 atcgatcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtc 34557304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 10340281 - 10340324
Alignment:
Q  52 cgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatg 95  Q
    ||||||||||||||   |||||||||||||||||||||||||||    
T  10340281 cgatcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 41877273 - 41877220
Alignment:
Q  43 ctcattcatcgatcttaaaagtgcatgcgtgagttaactcacgttgaaaaatgt 96  Q
    ||||||||||||| || ||||||| | | |||||||||||||| ||||||||||    
T  41877273 ctcattcatcgatttttaaagtgcctacatgagttaactcacgctgaaaaatgt 41877220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University