View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_66 (Length: 285)
Name: NF11854_high_66
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 24803454 - 24803708
Alignment:
| Q |
19 |
aagaatctgctaaacttgccgctctgtatctattggtaaaggaaaccaaataatacatatatataacttccagcaaaaacgagcatagactgnnnnnnnn |
118 |
Q |
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| T |
24803454 |
aagaatctgctaaacttgctgctctgtatctattggtaaaggaaaccaaataatacatatatataacttccagcaaaaacgagcatt-actgaaaaaaaa |
24803552 |
T |
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| Q |
119 |
cttaaaacagtatcattaaatatagcttccatgaaataggaaataggaaaatgaatcacgtgttgaaaaagcttgggtttcatgtggtttaaaatatgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24803553 |
cttaaaacagtatcattaaatatagcttccatgaaataggaaataggaaaatgattcatgtgttaaaaaagctttggtttcatgtggtttaaaatatgca |
24803652 |
T |
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| Q |
219 |
tttcagtaattcaagttcctattaagatttgtccacgatcaaaaaatctaatctct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24803653 |
tttcagtaattcaagttcctattaagatttgtccacgatcaaaaaatctaatctct |
24803708 |
T |
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