View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_69 (Length: 277)
Name: NF11854_high_69
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 49871290 - 49871045
Alignment:
| Q |
18 |
gtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaa |
117 |
Q |
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| T |
49871290 |
gtaagttgtaatgatcgatttgttattaatt-gacaggtgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaa |
49871192 |
T |
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| Q |
118 |
agcatcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871191 |
agcatcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaag |
49871092 |
T |
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| Q |
218 |
acaattctaccgcgactgcaccattaccggaacaatcgactttgtct |
264 |
Q |
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| T |
49871091 |
acaattctaccgcgactgcaccattaccggaacaatcgactttgtct |
49871045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 37 - 264
Target Start/End: Complemental strand, 49865334 - 49865108
Alignment:
| Q |
37 |
ttgttattaatttgacaggtgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccct |
136 |
Q |
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| T |
49865334 |
ttgttattaattgg-caggtgtgaactctgcccatttcaccgccttgaacgtcggatttgagaactcagccggtgccgcaaagcaccaagcagtggccct |
49865236 |
T |
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| Q |
137 |
ccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgc |
236 |
Q |
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| T |
49865235 |
ccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgc |
49865136 |
T |
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| Q |
237 |
accattaccggaacaatcgactttgtct |
264 |
Q |
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|| |||| ||||||||| |||||||||| |
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| T |
49865135 |
actattagcggaacaattgactttgtct |
49865108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 262
Target Start/End: Original strand, 13967491 - 13967632
Alignment:
| Q |
121 |
atcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagaca |
220 |
Q |
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|||||||||| |||||||| ||||||||||| ||||| | ||| ||||||| ||||| |||||| |||||| ||||||||| |||||| || | || |
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| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
|
| Q |
221 |
attctaccgcgactgcaccattaccggaacaatcgactttgt |
262 |
Q |
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| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgt |
13967632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 13960326 - 13960443
Alignment:
| Q |
120 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
219 |
Q |
| |
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||||||||||| || ||||| |||||||||||||||||| | |||||||||||| |||| | |||||||||| ||||||| | | ||||| || | | |
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| T |
13960326 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
13960425 |
T |
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| Q |
220 |
aattctaccgcgactgca |
237 |
Q |
| |
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|||||||||| ||||||| |
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| T |
13960426 |
aattctaccgtgactgca |
13960443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 19394624 - 19394572
Alignment:
| Q |
183 |
ggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactg |
235 |
Q |
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| T |
19394624 |
ggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactg |
19394572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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