View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_7 (Length: 805)

Name: NF11854_high_7
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_7
NF11854_high_7
[»] chr2 (2 HSPs)
chr2 (357-805)||(42935391-42935842)
chr2 (1-315)||(42935077-42935391)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 357 - 805
Target Start/End: Original strand, 42935391 - 42935842
Alignment:
Q  357 tcagagatattatgtagaaacacatattatcaagttaactaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca 456  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935391 tcagagatattatgtagaaacacatattatcaagttaattaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca 42935490  T
Q  457 tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935491 tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc 42935590  T
Q  557 ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcgcggttc 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42935591 ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcacggttc 42935690  T
Q  657 ttaacaacaccaccaacattttcatgatca---acatcagtagtattggtctttggctccatcacagttcctgatgctgtaacaacatcatcctcttgga 753  Q
    |||||||||||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42935691 ttaacaacaccaccgacattttcatgatcaaccacatcagaagtattggtctttggctccatcacagttcctgatgctgtaacaacagcatcctcttgga 42935790  T
Q  754 tcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctctgct 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42935791 tcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctttgct 42935842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 42935077 - 42935391
Alignment:
Q  1 tatttccgatttttcatttctctgttaaaataaaactatccccagccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935077 tatttccgatttttcatttctctgttaaaataaaactatcccctgccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc 42935176  T
Q  101 tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935177 tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa 42935276  T
Q  201 tccgttgaactgcgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccagtagagtatctaacttta 300  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  42935277 tccgttgcactgtgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccggtagagtatctaaattta 42935376  T
Q  301 agaaatacaacatat 315  Q
    |||||||||||||||    
T  42935377 agaaatacaacatat 42935391  T

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