View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_71 (Length: 274)

Name: NF11854_high_71
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_71
NF11854_high_71
[»] chr1 (3 HSPs)
chr1 (18-141)||(30172857-30172986)
chr1 (179-259)||(30173012-30173092)
chr1 (85-141)||(30145150-30145206)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 30172857 - 30172986
Alignment:
Q  18 gttttccgtgtagaagtaatgcatgttgttagcatcactacaaagaagtccacagtattgtggagcaaac----tgcgtgacacacagaaattataacat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||    
T  30172857 gttttccgtgtagaagtaatgcatgttgttagcatcactacaaagaagtccatagtattgtggagcaaactgcatgcgtgacacacagaaattataacat 30172956  T
Q  114 taatatcaatac--atgatcattaatcaag 141  Q
    |||||||| |||  || |||||||||||||    
T  30172957 taatatcattacatattatcattaatcaag 30172986  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 30173012 - 30173092
Alignment:
Q  179 acgttgtcaagaggaggcatgttggccattttttgagctccctttgagataattacagaatcaagattgtgtctctgtgct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30173012 acgttgtcaagaggaggcatgttggccattttttgagctccctttgagataattacagaagcaagattgtgtctctgtgct 30173092  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 30145150 - 30145206
Alignment:
Q  85 aactgcgtgacacacagaaattataacattaatatcaatacatgatcattaatcaag 141  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  30145150 aactgcgtgacacacagaaattatcacattaatatcattacattatcattaatcaag 30145206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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