View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_76 (Length: 263)
Name: NF11854_high_76
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 49852254 - 49852475
Alignment:
| Q |
33 |
ctttggctctgctgctactatgatggtagactttcagaattagacatttatctccagattggcggtgccttctccagtgaaattgattttttcacaacct |
132 |
Q |
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| T |
49852254 |
ctttggctctgctgctactatgatggtagactttcagaattagacatttatctccagattggcggtgccttctccagtgaaattgattttttcacaacct |
49852353 |
T |
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| Q |
133 |
ttttctctactaccgaatcttcagacccttctttttctccttctctaccgaaaacttcaagttttccttcttttgatcttgacctacctttcaccacgtc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49852354 |
ttttctctactaccgaatcttcagacccttctttttctccttctctaccgaaaacttcaagttttccttcttttgatcttgacctacctttcaccacgtc |
49852453 |
T |
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| Q |
233 |
ccgaattcaacaatccctatgc |
254 |
Q |
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|||||||||||||||||||||| |
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| T |
49852454 |
ccgaattcaacaatccctatgc |
49852475 |
T |
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