View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_9 (Length: 731)

Name: NF11854_high_9
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_9
NF11854_high_9
[»] chr1 (1 HSPs)
chr1 (1-712)||(11592709-11593438)


Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Original strand, 11592709 - 11593438
Alignment:
Q  1 gaaatgaaccacaaagaaaagagtttgattttgacaaattttcaatgtcagaattttcttagtcaatcaatcagaaatcagcatagatgcgatatttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592709 gaaatgaaccacaaagaaaagagtttgattttgacaaattttcaatgtcagaattttcttagtcaatcaatcagaaatcagcatagatgcgatatttaaa 11592808  T
Q  101 gttgttataattaaagtcgaacatttttaatgatctcacggttatatttgtttgacaatataaaatttgttacggcgacaaagtatacaaattaaatcac 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592809 gttgttataattaaagtcgaacatttttaatgatctcaaggttatatttgtttgacaatataaaatttgttacggcgacaaagtatacaaattaaatcac 11592908  T
Q  201 agagaaaaaattattgnnnnnnntttaagaagctaactacactgtctttagctagaaagaagatttgtcttgaattcttcccatggcacatccttctgca 300  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592909 agagaaaaaattattgaaaaaaatttaagaagctaactacactgtctttagctagaaagaagatttgtcttgaattcttcccatggcacatccttctgca 11593008  T
Q  301 gatactctatattggcagggtcaaaaggccctttgattctatctatagactttatcactgccctggctggaagaatgcttcttgttgggtcaggggaagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593009 gatactctatattggcagggtcaaaaggccctttgattctatctatagactttatcactgccctggctggaagaatgcttcttgttgggtcaggggaagt 11593108  T
Q  401 accatagctcaaggatgaagaaaacccctgtaataaaatggtttgttactaaatttctttcaagaaatatctttctacatcaattagcctac-------- 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            
T  11593109 accatagctcaaggatgaagaaaacccctgtaataaaatggtttgttactaaatttctttcaagaaatttctttctacatcaattagcctaccattattt 11593208  T
Q  493 ---------aaatttggtaaaatcacaagaa-ttttaatgtacttcttgcctttttctaatcagnnnnnnngtagattcatatatttataaataatttgt 582  Q
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  11593209 gtaaaacaaaaatttggtaaaatcacaagaatttttaatgtacttcttgcctttttctaatcagaaaaaaagtagattcatatatttataaataatttgt 11593308  T
Q  583 ttgttttattggttattggatagcaagactcttaaaatcaattattgacatatagatttcaaacttaccttgaagataagcacttctacttcattttggt 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593309 ttgttttattggttattggatagcaagactcttaaaatcaattattgacatatagatttcaaacttaccttgaagataagcacttctacttcattttggt 11593408  T
Q  683 ccacaagtgcatgaacaatgagtgcttctc 712  Q
    ||||||||||||||||||||||||||||||    
T  11593409 ccacaagtgcatgaacaatgagtgcttctc 11593438  T

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