View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_high_90 (Length: 245)
Name: NF11854_high_90
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_high_90 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 41944 - 42050
Alignment:
| Q |
120 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
219 |
Q |
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|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
41944 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg |
42043 |
T |
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| Q |
220 |
atcatag |
226 |
Q |
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||||||| |
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| T |
42044 |
atcatag |
42050 |
T |
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Target: scaffold0003; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 35274 - 35380
Alignment:
| Q |
120 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
219 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
35274 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcg |
35373 |
T |
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| Q |
220 |
atcatag |
226 |
Q |
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||||||| |
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| T |
35374 |
atcatag |
35380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 27445414 - 27445308
Alignment:
| Q |
120 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
219 |
Q |
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|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
27445414 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg |
27445315 |
T |
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| Q |
220 |
atcatag |
226 |
Q |
| |
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||||||| |
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| T |
27445314 |
atcatag |
27445308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 37618447 - 37618559
Alignment:
| Q |
6 |
agcagcacagaccaaaacacacatagcccaaataatccttaaccaaatacagatgtgcacagaggaggaatctgattacagcgatgaaccactacgaatc |
105 |
Q |
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|||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
37618447 |
agcaacacacacaaaaacacacatagcccaaataatccttaaccaaacacagatgtgcac---cgaggaacctgattacagcgatgtaccactacgaatc |
37618543 |
T |
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| Q |
106 |
cagagaacctggtgaa |
121 |
Q |
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|||||||||||||||| |
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| T |
37618544 |
cagagaacctggtgaa |
37618559 |
T |
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