View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_high_97 (Length: 239)

Name: NF11854_high_97
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_high_97
NF11854_high_97
[»] chr1 (4 HSPs)
chr1 (1-222)||(11630777-11630998)
chr1 (72-222)||(11675643-11675793)
chr1 (72-222)||(11683227-11683377)
chr1 (73-222)||(11639611-11639760)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11630777 - 11630998
Alignment:
Q  1 cgggttctaccaaaagattcatacttaactgaagcttattaactctgcaacatgcgttctaatataagttaataacatggtttcatggtgcaggaagtgc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  11630777 cgggttctacaaaaagattcatacttaactgaagcttattaactctgcaacatgcagtctaatataagttaataacatggttttatggtgcaggaagtgc 11630876  T
Q  101 agaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctga 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11630877 agaagtattttaccgattacatactcaatgattgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctga 11630976  T
Q  201 tccatgtgttgagcttgcaaag 222  Q
    ||||||||||||||||||||||    
T  11630977 tccatgtgttgagcttgcaaag 11630998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 11675793 - 11675643
Alignment:
Q  72 ataacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgca 171  Q
    |||||||||||| ||||||||||| ||| || ||||||||||| ||||||| ||||| ||  |||||||||||||| |||||||||||||||||||||||    
T  11675793 ataacatggttttatggtgcaggaggtggaggagtattttaccaattacatgctcaatgacagtcttggaataatttccaatgcacacactgtctttgca 11675694  T
Q  172 gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag 222  Q
    || ||||||||||  ||||||||| |||| |||||| |||| |||||||||    
T  11675693 gataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaag 11675643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 11683377 - 11683227
Alignment:
Q  72 ataacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgca 171  Q
    |||||||||||| ||| ||||||| ||| || | ||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||    
T  11683377 ataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgca 11683278  T
Q  172 gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag 222  Q
    || || |||||||| |||||||||||||| |||||| |||| |||||||||    
T  11683277 gataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaag 11683227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 11639611 - 11639760
Alignment:
Q  73 taacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgcag 172  Q
    ||||||||||| ||||||||||| ||| || ||||||| ||| |||| |||||||| ||  |||| ||||||||||||||||||||||| ||||||||||    
T  11639611 taacatggtttaatggtgcaggaggtggaggagtatttcaccaattatatactcaatgacagtctcggaataattgccaatgcacacacagtctttgcag 11639710  T
Q  173 acaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag 222  Q
    | ||||||||||  ||||||||| |||| |||||| | ||||||||||||    
T  11639711 ataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaag 11639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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