View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_1 (Length: 1526)

Name: NF11854_low_1
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_1
NF11854_low_1
[»] chr5 (14 HSPs)
chr5 (428-887)||(12318501-12318958)
chr5 (1149-1512)||(12319310-12319677)
chr5 (42-382)||(12318146-12318502)
chr5 (914-1054)||(12318957-12319097)
chr5 (362-544)||(16999111-16999293)
chr5 (1072-1135)||(12319212-12319275)
chr5 (354-453)||(12317894-12317993)
chr5 (336-426)||(6132858-6132948)
chr5 (372-446)||(20355657-20355730)
chr5 (354-426)||(38386545-38386617)
chr5 (608-645)||(16999393-16999430)
chr5 (384-443)||(15426131-15426190)
chr5 (391-437)||(7159550-7159596)
chr5 (413-450)||(43185852-43185889)
[»] chr7 (8 HSPs)
chr7 (813-1054)||(29809481-29809720)
chr7 (669-771)||(29809350-29809452)
chr7 (370-441)||(9236896-9236967)
chr7 (353-418)||(8670938-8671003)
chr7 (353-441)||(10656089-10656177)
chr7 (353-451)||(1756756-1756854)
chr7 (355-404)||(1099759-1099808)
chr7 (383-453)||(26641086-26641155)
[»] chr4 (9 HSPs)
chr4 (648-878)||(24835103-24835330)
chr4 (366-453)||(36083560-36083647)
chr4 (352-440)||(12115939-12116027)
chr4 (372-446)||(5284243-5284316)
chr4 (151-206)||(34593013-34593068)
chr4 (386-453)||(46626810-46626877)
chr4 (386-444)||(25155522-25155580)
chr4 (353-441)||(30253110-30253198)
chr4 (386-444)||(5689374-5689431)
[»] chr3 (6 HSPs)
chr3 (329-511)||(1318997-1319179)
chr3 (365-446)||(28715147-28715228)
chr3 (353-441)||(4245762-4245850)
chr3 (366-445)||(497433-497512)
chr3 (338-408)||(36869975-36870045)
chr3 (607-647)||(1317253-1317291)
[»] chr6 (10 HSPs)
chr6 (354-473)||(11966513-11966632)
chr6 (353-444)||(11761407-11761497)
chr6 (370-441)||(21077304-21077375)
chr6 (367-453)||(21098561-21098647)
chr6 (367-453)||(21075420-21075506)
chr6 (384-453)||(20743061-20743130)
chr6 (353-441)||(21053613-21053701)
chr6 (370-426)||(21076888-21076944)
chr6 (366-441)||(21052197-21052272)
chr6 (370-441)||(21054039-21054109)
[»] chr1 (12 HSPs)
chr1 (353-453)||(9923834-9923934)
chr1 (353-453)||(11910123-11910223)
chr1 (336-453)||(12198626-12198742)
chr1 (354-431)||(18606031-18606108)
chr1 (391-444)||(126620-126673)
chr1 (338-426)||(41385311-41385399)
chr1 (354-441)||(26686421-26686514)
chr1 (354-441)||(33169277-33169370)
chr1 (393-444)||(31953370-31953421)
chr1 (1254-1320)||(8015783-8015849)
chr1 (391-437)||(16640285-16640331)
chr1 (439-492)||(18604761-18604814)
[»] chr2 (9 HSPs)
chr2 (354-456)||(16114225-16114327)
chr2 (336-453)||(9011369-9011485)
chr2 (354-426)||(34486000-34486072)
chr2 (338-441)||(34756742-34756851)
chr2 (366-453)||(9751913-9752000)
chr2 (354-441)||(13654735-13654822)
chr2 (366-453)||(38415868-38415955)
chr2 (393-441)||(29759791-29759839)
chr2 (392-441)||(8691174-8691223)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1072-1135)||(8990-9053)
[»] scaffold0459 (2 HSPs)
scaffold0459 (1072-1135)||(9066-9129)
scaffold0459 (1181-1224)||(9197-9241)
[»] scaffold0127 (2 HSPs)
scaffold0127 (338-436)||(28494-28592)
scaffold0127 (338-436)||(35400-35498)
[»] chr8 (7 HSPs)
chr8 (354-426)||(24674578-24674650)
chr8 (394-448)||(18983672-18983726)
chr8 (353-441)||(26945738-26945826)
chr8 (354-440)||(6377582-6377668)
chr8 (353-437)||(17898732-17898816)
chr8 (391-441)||(12478217-12478267)
chr8 (353-426)||(33091934-33092006)
[»] scaffold0655 (1 HSPs)
scaffold0655 (366-441)||(1489-1562)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 428 - 887
Target Start/End: Original strand, 12318501 - 12318958
Alignment:
Q  428 ggaaccgcaggaaacttacctgcggatatactcatttgataatccgtaggaaacttctgggcagcgttttgtgggttttcctgcacgtgtccctgttttc 527  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12318501 ggaaccgcaggaaacttaactgcggatatactcctttgataatccgtaggaaacttctgggcagcgttttgtgggttttcctgcccgtgtccctgttttc 12318600  T
Q  528 tgaaacatatccgcaggaaataaccgaaatccgtatgcgcaggaaattgatatattatttnnnnnnnnttattacactagaatgcattccttatttaaaa 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  12318601 tgaaacatatccgcaggaaataaccgaaatccgtatgcgcaggaaattgatatattatttaaaaaaaattattacactagaatgcattccttatttaaaa 12318700  T
Q  628 tcattttatttattttacagagaaaaatgtaacacaaacatcatcaatagataaaattattaaagataatcttatagtcaaatattgcaatgacttttcc 727  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  12318701 tcattttatttattttacagagaaaaatgtaacacaaacatca---atagataaaattattaaacataatcttatagtcaaatattgcaatgaattttcc 12318797  T
Q  728 tctgaatattaactctt-gacatgatgaaaaactagaatgaaggctgcctttgacagagatagaaaactagagagggtctaacatcttttaataaattga 826  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12318798 tttgaatattaactctttgacatgatgaaaaactagaatgaaggctgcctttgacagagatagaaaacaagagagggtctaacatcttttaataaattga 12318897  T
Q  827 tattttaagattacccaagtgaagcatacatttgttttctaaaggagttctacagaggtac 887  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12318898 tattttaagattacccaagtgaagcatacatttgttttctaaaggagttctacagaggtac 12318958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1149 - 1512
Target Start/End: Original strand, 12319310 - 12319677
Alignment:
Q  1149 tagagagtcatcacaaaaagtata----gtgtactagttttacacgttcaaagaaaaatcaacaagaaacatacatactataaatcaataacaacttaaa 1244  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  12319310 tagagagtcatcacaaaaagtatatatagtgtactagttttacacgttcaaagaaaaatcaacaagaaacacacatactacaaatcaataacaacttaaa 12319409  T
Q  1245 atgcaataacagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcctatctagttttgttcttcaaggaa 1344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  12319410 atgcaataacagaaactcacatatctagtccttgactttccatagcctcactaagacaagaaaccacatctcttcctatctagttttgttcttcaaggaa 12319509  T
Q  1345 ctttcaaactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgtt 1444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12319510 ctttcaaactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgtt 12319609  T
Q  1445 aacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtcca 1512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12319610 aacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtcca 12319677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-128
Query Start/End: Original strand, 42 - 382
Target Start/End: Original strand, 12318146 - 12318502
Alignment:
Q  42 tgtccgacggtaaccacacagaccaccttcacaactgagaacaggttctatccttccatttatttattgtttttagaaatttgaatctgttatgaactgg 141  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  12318146 tgtccgacggtaaccacacagaccaccttcaaacctgagaacaggttcgatccttccatttgtttattgtttttagaaatttgaatatgttatgaactgg 12318245  T
Q  142 tatacttgtttattctgagcactaaattaatctctactgctagcttttatgtgtaaaactcattaaacaattcccagttgaatttatgcatttctatatt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12318246 tatacttgtttattctgagcactaaattaatctctactgctagcttttatgtgtaaaactcattaaacaatgcccagttgaatttatgcatttctatatt 12318345  T
Q  242 ttacaaaattctttatgaagcatggcgggtcattagatgatgattggaagcataatgccaatactagagactctcg-----------------cctgcga 324  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||                 |||||||    
T  12318346 ttacaaaattctttatgaagcatggc-ggtcattagatgatggttggaagcataatgccaacagtagagactctcgattttcctgcagaagtacctgcga 12318444  T
Q  325 aatttaggtatatttccgcaggaatttcgtttcctgtggaatttgccaaggattcagg 382  Q
    | | |||||||||||||| ||||||| | ||||||| |||||||||||||||||||||    
T  12318445 attgtaggtatatttccgaaggaattccttttcctgcggaatttgccaaggattcagg 12318502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 8e-71
Query Start/End: Original strand, 914 - 1054
Target Start/End: Original strand, 12318957 - 12319097
Alignment:
Q  914 acaacttggccttgccatatagattgtttaaagctacaacaaatgcaatcctaatgagtcgtataaattgttttcagatgcccaaagtgaatagcacaaa 1013  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12318957 acaacttggccttgccatatagattgtttaaagctacaacaaatgcaatcctaatgagtcgtataaattgttttcagatacccaaagtgaatagcacaaa 12319056  T
Q  1014 ttatttttcatggataatctctacagaagcattcaactatt 1054  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12319057 ttatttttcatggataatctctacagaagcattcaactatt 12319097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 362 - 544
Target Start/End: Original strand, 16999111 - 16999293
Alignment:
Q  362 ggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcggatatactca 461  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| |||   ||||| ||||||| | | ||||||||||||| || || |||||||||||     
T  16999111 ggaatttgccagggattcaggttcctagctaataccttcgtggataatgttttcccgaggattatagaaaccgcaggaaacgtaactccggatatactcc 16999210  T
Q  462 tttgataatccgtaggaaacttctgggcagcgttttgtgggttttcctgcacgtgtccctgttttctgaaacatatccgcagg 544  Q
        |||||| | ||||||||||||||||||||||   || |||| |||| |||  |||||||||||||||||||| ||||||    
T  16999211 cacaataatctgcaggaaacttctgggcagcgtttcaaggatttttctgcccgtaaccctgttttctgaaacatatacgcagg 16999293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1072 - 1135
Target Start/End: Original strand, 12319212 - 12319275
Alignment:
Q  1072 aaatccaatcatctatatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg 1135  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12319212 aaatccaatcatctttatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg 12319275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 354 - 453
Target Start/End: Complemental strand, 12317993 - 12317894
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    |||||| |||| ||||| ||||||| |||||||||| ||  |||||||||||||| |||||||||||||||||  || | |||||||||| |||||||||    
T  12317993 tttcctatggattttgctaaggatttaggttcccaggtataaccttcgtgggtaattgtttcctgaggattttatgatctgcaggaaactaacctgcgga 12317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 6132858 - 6132948
Alignment:
Q  336 atttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    |||||||||||||    |||| ||| ||||||| |||| |||| |||||||||| ||  |||||||||||||| |||||||||||||||||    
T  6132858 atttccgcaggaaacctgttttctgcggaatttaccaaagatttaggttcccaggtataaccttcgtgggtaattgtttcctgaggatttt 6132948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 20355657 - 20355730
Alignment:
Q  372 aaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttac 446  Q
    ||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  20355657 aaggattaaggtttcc-gctaatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaaattac 20355730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 38386545 - 38386617
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||  ||||| |||||||| || |||||    
T  38386545 tttcctgcggattttgccaaggattgaggttcccaggtaataccttcgaaggtaattgtttccttagaatttt 38386617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 608 - 645
Target Start/End: Original strand, 16999393 - 16999430
Alignment:
Q  608 aatgcattccttatttaaaatcattttatttattttac 645  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16999393 aatgcattccatatttaaaatcattttatttattttac 16999430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 15426190 - 15426131
Alignment:
Q  384 tcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaact 443  Q
    |||||| |||||||||||||||||| | ||||||||||||||  | ||||||| ||||||    
T  15426190 tcccaggtaataccttcgtgggtaattatttcctgaggatttctgaaaccgcaagaaact 15426131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 7159596 - 7159550
Alignment:
Q  391 taataccttcgtgggtaactgtttcctgaggattttgggaaccgcag 437  Q
    |||||||||||||||||| |||||||| |||||||| ||| ||||||    
T  7159596 taataccttcgtgggtaattgtttccttaggattttaggatccgcag 7159550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 43185889 - 43185852
Alignment:
Q  413 ttcctgaggattttgggaaccgcaggaaacttacctgc 450  Q
    |||||||||||||| | |||||||||||||||||||||    
T  43185889 ttcctgaggattttagaaaccgcaggaaacttacctgc 43185852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 4e-91; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 4e-91
Query Start/End: Original strand, 813 - 1054
Target Start/End: Original strand, 29809481 - 29809720
Alignment:
Q  813 ttttaataaattgatattttaagattacccaagtgaagcatacatttgttttctaaaggagttctacagaggtactttcattgaatttataagttcatag 912  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29809481 ttttaattaattgatatt--aagattacccaagtgaaacatacatttgttttttaaaggagttctacagaggtactttcattgaatttataagttcatag 29809578  T
Q  913 cacaacttggccttgccatatagattgtttaaagctacaacaaatgcaatcctaatgagtcgtataaattgttttcagatgcccaaagtgaatagcacaa 1012  Q
    |||||||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  29809579 cacaacttggccttgccatatagattgtttcaagctgcatcgaatgcaatcgtaatgagtcgcataaattgtttacagatgcacaaagtgaatagcacaa 29809678  T
Q  1013 attatttttcatggataatctctacagaagcattcaactatt 1054  Q
    || |||||||||||||||||  |||||| |||||||||||||    
T  29809679 atgatttttcatggataatcattacagaggcattcaactatt 29809720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 669 - 771
Target Start/End: Original strand, 29809350 - 29809452
Alignment:
Q  669 catcaatagataaaattattaaagataatcttatagtcaaatattgcaatgacttttcctctgaatattaactcttgacatgatgaaaaactagaatgaa 768  Q
    ||||||||||| |||| ||| || | ||||| ||||||||||||||||||| |||||| | | || |||||||||||||||||  ||||||||||| |||    
T  29809350 catcaatagatcaaataattcaacacaatctcatagtcaaatattgcaatgtcttttcatttaaagattaactcttgacatgacaaaaaactagaacgaa 29809449  T
Q  769 ggc 771  Q
    |||    
T  29809450 ggc 29809452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 9236896 - 9236967
Alignment:
Q  370 ccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||||||||||||||| |||||||||||||||||| || |||| ||||| ||| ||| ||||||||||    
T  9236896 ccaaggattcaggttcccaggtaataccttcgtgggtaattgattcccgaggaatttaggatccgcaggaaa 9236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 8670938 - 8671003
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctg 418  Q
    |||||||| ||| ||||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  8670938 gtttcctgcggattttgccaaggattaaggttcccaggtaataccttcgtaggtaattgtttcctg 8671003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 10656177 - 10656089
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||| ||| ||| ||||  |||||| ||||||| |||||||||||||| ||| || |||||||||||||| ||| || |||||||    
T  10656177 gtttcctgcggattttcccaattattcagattcccaggtaataccttcgtggataattgattcctgaggattttaggatccacaggaaa 10656089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 1756854 - 1756756
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcg 451  Q
    |||||||| ||||||||||| ||||| |||||||||  ||  ||||| |||||||| ||||| ||||||||||| | |||| ||  |||||| ||||||    
T  1756854 gtttcctgcggaatttgccatggatttaggttcccatgtataacctttgtgggtaattgttttctgaggattttagtaaccacataaaactttcctgcg 1756756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 1099808 - 1099759
Alignment:
Q  355 ttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgg 404  Q
    |||||| |||||||||||| |||| |||||||||| ||||||||||||||    
T  1099808 ttcctgcggaatttgccaaagatttaggttcccaggtaataccttcgtgg 1099759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 26641155 - 26641086
Alignment:
Q  383 ttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||| ||||||||| ||||  || ||||||||||||||||| | ||||||||||||  ||||||||||    
T  26641155 ttcccaggtaataccttagtgga-aattgtttcctgaggattttagaaaccgcaggaaatgtacctgcgga 26641086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-87; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-87
Query Start/End: Original strand, 648 - 878
Target Start/End: Complemental strand, 24835330 - 24835103
Alignment:
Q  648 agaaaaatgtaacacaaacatcatcaatagataaaattattaaagataatcttatagtcaaatattgcaatgacttttcctctgaatattaactcttgac 747  Q
    |||||||||||||| ||||||||   |||||| |||| |||||| ||||| | ||||||||||||||||||| |||||||| |||| |||||||||||||    
T  24835330 agaaaaatgtaacaaaaacatca---atagatcaaataattaaacataatttcatagtcaaatattgcaatgtcttttcctttgaagattaactcttgac 24835234  T
Q  748 atgatgaaaaactagaatgaaggctgcctttgacagagatagaaaactagagagggtctaacatcttttaataaattgatattttaagattacccaagtg 847  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24835233 atgatgaaaaactagaatgaacgctgcctttgacagagatagaaaacaagagaaggtctaacatcttttaataaattgatattttaagattacccaagtg 24835134  T
Q  848 aagcatacatttgttttctaaaggagttcta 878  Q
    |||||||| ||||||||||||||||||||||    
T  24835133 aagcatacttttgttttctaaaggagttcta 24835103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 36083560 - 36083647
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  36083560 tttgccaaggattaaggttcccaggtaataccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacctgcgga 36083647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 12116027 - 12115939
Alignment:
Q  352 cgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaa 440  Q
    ||||||||  ||||||||||||||| |  ||||||||| ||| |||||||||||||| |||||||| || ||||| ||| |||||||||    
T  12116027 cgtttcctacggaatttgccaaggaatttggttcccaggtaacaccttcgtgggtaattgtttccttagaattttaggatccgcaggaa 12115939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 5284243 - 5284316
Alignment:
Q  372 aaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttac 446  Q
    ||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  5284243 aaggattaaggtttcc-gctaatacctttgtgggtaattgtttcctgaggattttaggaaccgcagaaaaattac 5284316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 34593013 - 34593068
Alignment:
Q  151 ttattctgagcactaaattaatctctactgctagcttttatgtgtaaaactcatta 206  Q
    ||||||||||||||||| |||||||||||||||| || ||||||| ||| ||||||    
T  34593013 ttattctgagcactaaactaatctctactgctagtttctatgtgtgaaattcatta 34593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 46626810 - 46626877
Alignment:
Q  386 ccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    |||| |||||| ||||||||||| || ||| ||||||||||  |||||||||||||||||| ||||||    
T  46626810 ccaggtaatacattcgtgggtaattgcttcatgaggattttatgaaccgcaggaaacttacttgcgga 46626877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 25155580 - 25155522
Alignment:
Q  386 ccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactt 444  Q
    |||| |||||||||||||| ||| ||||||||||||||||  | |||||||||||||||    
T  25155580 ccaggtaataccttcgtggttaattgtttcctgaggatttaagaaaccgcaggaaactt 25155522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 30253110 - 30253198
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||| ||| ||| || |||||| | |||||||  ||  |||||||||||||| ||||||||||| ||||| | ||||||||||||    
T  30253110 gtttcctggggattttacctaggatttaagttcccaagtatgaccttcgtgggtaattgtttcctgagaattttagtaaccgcaggaaa 30253198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 5689374 - 5689431
Alignment:
Q  386 ccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactt 444  Q
    |||| |||||||| ||||||||| ||||||||||||||||| | ||| |||||||||||    
T  5689374 ccaggtaatacct-cgtgggtaattgtttcctgaggatttttgaaacagcaggaaactt 5689431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-50
Query Start/End: Original strand, 329 - 511
Target Start/End: Complemental strand, 1319179 - 1318997
Alignment:
Q  329 taggtatatttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgg 428  Q
    ||||||||||||||||||||  |  ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  1319179 taggtatatttccgcaggaaagttatttcctgcggaatttgtcaaggattcaggttcccagctaataccttcgtgggtaattgtttcctgaggattttag 1319080  T
Q  429 gaaccgcaggaaacttacctgcggatatactcatttgataatccgtaggaaacttctgggcagcgttttgtgggttttcctgc 511  Q
    |||||||||||||  | ||||||||||| |||   |||||||||| ||||| |||||||| |||||||  |||||||||||||    
T  1319079 gaaccgcaggaaaagttcctgcggatattctctaatgataatccgcaggaatcttctgggaagcgtttgctgggttttcctgc 1318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 28715147 - 28715228
Alignment:
Q  365 atttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttac 446  Q
    ||||| ||| |||| ||||||||| |||||||||||| |||||| |||||||| |||||||| | |||||||||||| ||||    
T  28715147 atttgtcaacgatttaggttcccaactaataccttcgcgggtaattgtttccttaggattttagaaaccgcaggaaagttac 28715228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 441
Target Start/End: Complemental strand, 4245850 - 4245762
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||| ||| ||| ||||||||| | ||| |||| ||  |||||||||||||| ||||||||||||||||| | ||||||||||||    
T  4245850 gtttcctgcggattttaccaaggatttaagtttccaggtataaccttcgtgggtaattgtttcctgaggattttagtaaccgcaggaaa 4245762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 497433 - 497512
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactta 445  Q
    ||||| ||||||| |||||||||| ||  |||||||||||||| |||||||||||||||||  || |||||| |||||||    
T  497433 tttgctaaggatttaggttcccagatataaccttcgtgggtaattgtttcctgaggattttacgatccgcagaaaactta 497512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 36869975 - 36870045
Alignment:
Q  338 ttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaa 408  Q
    |||||||||||   ||||||||  ||| |||| |||||||| |||||||||  ||||||||||||||||||    
T  36869975 ttccgcaggaaacccgtttcctaaggattttgtcaaggatttaggttcccaagtaataccttcgtgggtaa 36870045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 607 - 647
Target Start/End: Complemental strand, 1317291 - 1317253
Alignment:
Q  607 gaatgcattccttatttaaaatcattttatttattttacag 647  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  1317291 gaatgcattccttatt--aaatcattttatttattttacag 1317253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 2e-34; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 354 - 473
Target Start/End: Complemental strand, 11966632 - 11966513
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||  |||||||    
T  11966632 tttcctgcggaatttgctaaggatttaggttcccagctaataccttcgtgggtaactgtttcgtgagaattttcgaaaccgcaggaaacttgactgcgga 11966533  T
Q  454 tatactcatttgataatccg 473  Q
    ||||||| | ||||||||||    
T  11966532 tatactcgtatgataatccg 11966513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 353 - 444
Target Start/End: Complemental strand, 11761497 - 11761407
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactt 444  Q
    |||||||| ||| |||||||||| || ||||||| || |||||||||||||||||| |||||||| |||| ||||||| |||||||||||||    
T  11761497 gtttcctgcggattttgccaaggttttaggttcctaggtaataccttcgtgggtaattgtttccttagga-tttgggatccgcaggaaactt 11761407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 21077375 - 21077304
Alignment:
Q  370 ccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||||||||||||||| |||| ||||||||| ||| || |||||||||||||| ||| ||||||||||    
T  21077375 ccaaggattcaggttcccaggtaatgccttcgtggttaattgattcctgaggattttaggatccgcaggaaa 21077304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 453
Target Start/End: Original strand, 21098561 - 21098647
Alignment:
Q  367 ttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    |||||||||||| |||||||| | ||  |||||||||||||| |||||||  |||||||| | ||||||||||||||| ||||||||    
T  21098561 ttgccaaggatttaggttccctggtataaccttcgtgggtaattgtttccataggattttagaaaccgcaggaaactttcctgcgga 21098647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 367 - 453
Target Start/End: Original strand, 21075420 - 21075506
Alignment:
Q  367 ttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    |||||||||||| |||||||| | ||  || ||||||||||| |||||||| |||||||| | ||||||||||||||| | ||||||    
T  21075420 ttgccaaggatttaggttccctggtataacattcgtgggtaattgtttccttaggattttagaaaccgcaggaaactttcatgcgga 21075506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 20743061 - 20743130
Alignment:
Q  384 tcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    |||||| |||||||||||||| ||  ||||||||||||||||| | |||||||||||| || ||||||||    
T  20743061 tcccaggtaataccttcgtggatagttgtttcctgaggattttagaaaccgcaggaaaatttcctgcgga 20743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 21053613 - 21053701
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||| || ||| ||| |||| ||||||||||||||  |||||||||||||||||| || ||||||| |||||| ||| ||||| ||||    
T  21053613 gtttcatgcggattttcccaatgattcaggttcccaagtaataccttcgtgggtaattgattcctgacgattttaggatccgcatgaaa 21053701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 21076888 - 21076944
Alignment:
Q  370 ccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    |||| ||||||||||||||  |||||||||||||||||| || ||||||||||||||    
T  21076888 ccaatgattcaggttcccaagtaataccttcgtgggtaattgattcctgaggatttt 21076944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 21052197 - 21052272
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||||||||| |||||||  | ||  |||||||||||||  |||||||| |||||||| | ||||||||||||    
T  21052197 tttgccaaggatttaggttccttggtataaccttcgtgggtagttgtttccttaggattttagtaaccgcaggaaa 21052272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 441
Target Start/End: Complemental strand, 21054109 - 21054039
Alignment:
Q  370 ccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||||||||||| |||| |||| ||||| ||||||| || ||||||| |||||| ||| ||||||||||    
T  21054109 ccaaggattcaggtt-ccaggtaatgccttcatgggtaattgattcctgacgattttaggatccgcaggaaa 21054039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 7e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 353 - 453
Target Start/End: Original strand, 9923834 - 9923934
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgg 452  Q
    |||| ||| ||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||    
T  9923834 gttttctgcggattttgccaaggattaaggttcccaggtaataccttcgtgggtaattgtttcctgaggattttagtaaccgcaggaaatttacctgcgg 9923933  T
Q  453 a 453  Q
    |    
T  9923934 a 9923934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 353 - 453
Target Start/End: Original strand, 11910123 - 11910223
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgg 452  Q
    ||||||||  || |||||||| |||| ||||| |||| |||||||||||||| ||| ||||||||||||||||| |||||| ||||||||| ||||||||    
T  11910123 gtttcctgcagattttgccaacgattaaggttaccaggtaataccttcgtggctaattgtttcctgaggattttaggaaccccaggaaactaacctgcgg 11910222  T
Q  453 a 453  Q
    |    
T  11910223 a 11910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 12198626 - 12198742
Alignment:
Q  336 atttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgc 435  Q
    ||||||||||||||   |||||||| ||| ||||||||| ||| |||||||||| ||||||||| |||||||| ||||| ||||||||||| | |||||     
T  12198626 atttccgcaggaatcctgtttcctgcggattttgccaagaattaaggttcccaggtaatacctttgtgggtaattgttt-ctgaggattttagtaaccgt 12198724  T
Q  436 aggaaacttacctgcgga 453  Q
    |||||| | |||||||||    
T  12198725 aggaaagtcacctgcgga 12198742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 18606108 - 18606031
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaa 431  Q
    ||||||| |||||||||||||||  || ||  |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  18606108 tttcctgcggaatttgccaaggaaacacgtatccagctaatacctttgtgggtaactatttcctgaggattttaggaa 18606031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 126620 - 126673
Alignment:
Q  391 taataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactt 444  Q
    |||||||||||||||||| |||||||||| |||||| | |||||||||||||||    
T  126620 taataccttcgtgggtaaatgtttcctgatgattttagaaaccgcaggaaactt 126673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 426
Target Start/End: Original strand, 41385311 - 41385399
Alignment:
Q  338 ttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    ||||||||||| |  ||||| || ||| ||| | |||||||||||||||||| ||||||||||||| ||||  | ||||||||||||||    
T  41385311 ttccgcaggaaatcggtttcatgcggattttcctaaggattcaggttcccaggtaataccttcgtgtgtaatggattcctgaggatttt 41385399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 26686514 - 26686421
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaa------taccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||| ||| ||||||||||||| |||||||||| |||      || |||||||||||| |||||||| |||||||| ||| ||||||||||    
T  26686514 tttcctgcggactttgccaaggatttaggttcccaggtaaatgtaatatcttcgtgggtaattgtttccttaggattttaggatccgcaggaaa 26686421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 33169370 - 33169277
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaa------taccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||| ||| ||||||||||||| |||||||||| |||      ||||||||||||||| |||||||| ||||| || ||| ||||||||||    
T  33169370 tttcctgcggattttgccaaggatttaggttcccaggtaaatgtaataccttcgtgggtaattgtttccttaggatattaggatccgcaggaaa 33169277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 31953421 - 31953370
Alignment:
Q  393 ataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaactt 444  Q
    |||| ||||||||||| | ||||||||||||||| | |||||||||||||||    
T  31953421 atactttcgtgggtaattatttcctgaggattttagaaaccgcaggaaactt 31953370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1254 - 1320
Target Start/End: Original strand, 8015783 - 8015849
Alignment:
Q  1254 cagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcc 1320  Q
    ||||||||| ||||||||||||||| ||||||| ||||||  | | ||||||||| |||| ||||||    
T  8015783 cagaaactcgcatatctagtccttgtctttccaaagcctcgttcaaacaagcaactacatctcttcc 8015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 16640331 - 16640285
Alignment:
Q  391 taataccttcgtgggtaactgtttcctgaggattttgggaaccgcag 437  Q
    |||||||||||||||||| |||||||| |||||||| ||| ||||||    
T  16640331 taataccttcgtgggtaattgtttccttaggattttaggatccgcag 16640285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 18604814 - 18604761
Alignment:
Q  439 aaacttacctgcggatatactcatttgataatccgtaggaaacttctgggcagc 492  Q
    |||||| |||||||||||||||   |||||||||| ||||||| ||||||||||    
T  18604814 aaactttcctgcggatatactctcatgataatccgcaggaaacatctgggcagc 18604761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 16114327 - 16114225
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||| || ||||  ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||| ||| ||||||    
T  16114327 tttcctgcggcatttatcaaggattcaggttcccagctaatacctttgtgggtaactgtttcctaaggattttaggaaccgcaagaaacatacatgcgga 16114228  T
Q  454 tat 456  Q
    |||    
T  16114227 tat 16114225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 9011485 - 9011369
Alignment:
Q  336 atttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgc 435  Q
    ||||||||||||| | | |||||||  || |||||||||| || |||||||||| |||||||||||||||||| | ||||||||||||||| | ||| ||    
T  9011485 atttccgcaggaaatcc-tttcctgcagattttgccaaggctttaggttcccagataataccttcgtgggtaattatttcctgaggattttagaaactgc 9011387  T
Q  436 aggaaacttacctgcgga 453  Q
    ||||||| | ||||||||    
T  9011386 aggaaacattcctgcgga 9011369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 34486072 - 34486000
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||  ||||||||    
T  34486072 tttcatgtggaatttgccaaggattcagtttcccagctaataccttcgtggaaaactgtttcccaaggatttt 34486000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 338 - 441
Target Start/End: Original strand, 34756742 - 34756851
Alignment:
Q  338 ttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaa------taccttcgtgggtaactgtttcctgaggattttgggaa 431  Q
    ||||| ||||||  ||||||||||||| ||||||||||||| |||||||||| |||      ||||||||||||||| |||||||| |||||||| |||     
T  34756742 ttccgtaggaatcacgtttcctgtggattttgccaaggatttaggttcccaggtaaatgtaataccttcgtgggtaattgtttccttaggattttaggat 34756841  T
Q  432 ccgcaggaaa 441  Q
    ||||||||||    
T  34756842 ccgcaggaaa 34756851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 9752000 - 9751913
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||||||||| ||||  |||| |||||||||||| ||||| |||||| |||||||||   |||| ||||||||||||||||||||    
T  9752000 tttgccaaggattaaggtatccaggtaataccttcgttggtaattgtttcatgaggatttgaagaactgcaggaaacttacctgcgga 9751913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 13654822 - 13654735
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||| ||  ||| ||||||||| ||| | ||||||||    
T  13654822 tttcctgcggattttgccaaggatttaggttcccaggtaataccttcgtgggtaattgaatccagaggattttaggatctgcaggaaa 13654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 38415955 - 38415868
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacctgcgga 453  Q
    ||||||||||||  ||||||| || ||||||| |||||||||| |||||||||||||  || |||||| |||||||||||| ||||||    
T  38415955 tttgccaaggatcaaggttcctaggtaataccatcgtgggtaattgtttcctgaggaacttaggaaccacaggaaacttacatgcgga 38415868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 29759839 - 29759791
Alignment:
Q  393 ataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||||||    
T  29759839 ataccttggtgggtaattgtttcctgaggatttttgaaaccgcaggaaa 29759791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 8691174 - 8691223
Alignment:
Q  392 aataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||| |||||||||||| |||||| |||||||||| | ||||||||||||    
T  8691174 aatatcttcgtgggtaattgtttcgtgaggattttagaaaccgcaggaaa 8691223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 60; Significance: 7e-25; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1072 - 1135
Target Start/End: Original strand, 8990 - 9053
Alignment:
Q  1072 aaatccaatcatctatatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg 1135  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8990 aaatccaatcatctttatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg 9053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 56; Significance: 2e-22; HSPs: 2)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1072 - 1135
Target Start/End: Original strand, 9066 - 9129
Alignment:
Q  1072 aaatccaatcatctatatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg 1135  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9066 aaatccaatcatctttatagtgtactgctcttcccgtaaaatcatctacaatacccttgaaagg 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1181 - 1224
Target Start/End: Original strand, 9197 - 9241
Alignment:
Q  1181 gttttacacgttcaaagaaaaatc-aacaagaaacatacatacta 1224  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  9197 gttttacacgttcaaagaaaaatcaaacaagaaacataaatacta 9241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 47; Significance: 4e-17; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 28592 - 28494
Alignment:
Q  338 ttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgca 436  Q
    ||||||||||| |  ||||| || ||| ||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| ||| |||||    
T  28592 ttccgcaggaaatcggtttcatgcggattttcccaaggattcaggttcccaggtaataccttcgtgtgtaattgattcctgaggattttaggatccgca 28494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 35498 - 35400
Alignment:
Q  338 ttccgcaggaatttcgtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgca 436  Q
    ||||||||||| |  ||||| || ||| ||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| ||| |||||    
T  35498 ttccgcaggaaatcggtttcatgcggattttcccaaggattcaggttcccaggtaataccttcgtgtgtaattgattcctgaggattttaggatccgca 35400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 6e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 24674650 - 24674578
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||| | |||||| ||||||||    
T  24674650 tttcctgcggattttgccaaggattgaggttcccaggtaataccttcgtgggtaattatttccttaggatttt 24674578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 18983726 - 18983672
Alignment:
Q  394 taccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaacttacct 448  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  18983726 taccttcgtgggtaattgtttcctgaggattttaggaaccgcaggaaactcacct 18983672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 26945738 - 26945826
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    |||||||  ||||||| ||||||||| |||||||||| ||  |||||||| ||||| ||| ||||||||||||| | ||||||||||||    
T  26945738 gtttcctacggaatttaccaaggatttaggttcccaggtataaccttcgttggtaattgtctcctgaggattttagtaaccgcaggaaa 26945826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 440
Target Start/End: Original strand, 6377582 - 6377668
Alignment:
Q  354 tttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaa 440  Q
    ||||||||||| |||| |||| ||| |||||||||  ||| | |||||||||||| |||||||||| |||||| ||| |||||||||    
T  6377582 tttcctgtggattttgtcaagaatttaggttcccatgtaacagcttcgtgggtaattgtttcctgaagattttaggatccgcaggaa 6377668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 17898732 - 17898816
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcag 437  Q
    |||||||| ||| |||||||||||||     |||||| |||||||||||||||||| | ||||||| ||||||| ||||||||||    
T  17898732 gtttcctgcggattttgccaaggattttcactcccaggtaataccttcgtgggtaattatttcctgtggattttaggaaccgcag 17898816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 12478217 - 12478267
Alignment:
Q  391 taataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||| |||||||||||| |||||||| |||||||| ||| ||||||||||    
T  12478217 taatatcttcgtgggtaattgtttccttaggattttaggatccgcaggaaa 12478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 33091934 - 33092006
Alignment:
Q  353 gtttcctgtggaatttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggatttt 426  Q
    ||||||||  || |||| |||||||| ||||| | || |||||||||||||||||| |||||||| ||||||||    
T  33091934 gtttcctgcagattttgtcaaggatttaggtttc-aggtaataccttcgtgggtaattgtttccttaggatttt 33092006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 1489 - 1562
Alignment:
Q  366 tttgccaaggattcaggttcccagctaataccttcgtgggtaactgtttcctgaggattttgggaaccgcaggaaa 441  Q
    ||||||||| ||| |||||||||| |||  ||||||||||||| |||||||| | |||||| ||| ||||||||||    
T  1489 tttgccaagaatttaggttcccagataa--ccttcgtgggtaattgtttccttaagattttaggatccgcaggaaa 1562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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