View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_10 (Length: 723)
Name: NF11854_low_10
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 22 - 710
Target Start/End: Complemental strand, 6318521 - 6317831
Alignment:
| Q |
22 |
ttggagacattctgttgagaaatttggcgcatgaatttattataataaatgaaataaaaataagttgggatttgctgctactaatccaccttcacctttg |
121 |
Q |
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| T |
6318521 |
ttggaaacattctgttgagaaatttggcgcatgaatttattataataaatgaaataaaaataagttgggatttgctgctactaatccaccttcacctttg |
6318422 |
T |
|
| Q |
122 |
tttgattgataagcctgctcggtattttacttgaggctcaaagataactgcatcaattgtacatgacaagtatctggtggatttttccatctatgcttcg |
221 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6318421 |
tttgattcataagcctgctcggtattttacttgaggctcaaagataactgcatcaattgtacatgacaagtatctggtggatttttccatctatgcttcg |
6318322 |
T |
|
| Q |
222 |
tgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagatt-----gttgcctgcatattcttagagtttaccattcataatcct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6318321 |
tgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagattatattgttgcctgcatattcttagagtttaccattcataatcct |
6318222 |
T |
|
| Q |
317 |
tgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacctacatacgtttgaatttaaggtcatatgtcactatact |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6318221 |
tgttgt----gcagctgttgatgacagtaaaattaaattctctccacatgatgaaactgacctacatacgtttgaatttaaggtcatatttcactatact |
6318126 |
T |
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| Q |
417 |
cccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctct |
516 |
Q |
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| T |
6318125 |
cccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgaacccctct |
6318026 |
T |
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| Q |
517 |
tgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatca |
616 |
Q |
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| T |
6318025 |
tgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatca |
6317926 |
T |
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| Q |
617 |
tatgaccatatttcactgatcaagtttcctcttggaacaacaacaccaaaaccag-atttagcttcactcattaatcaactcagttcttcatgat |
710 |
Q |
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| T |
6317925 |
tatgaccatatttcactgatcaagtttcctcttggaacaacaacaccaaaaccagaatttagcttcactcattaatcaactcagttcttcatgat |
6317831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 703
Target Start/End: Complemental strand, 6299993 - 6299943
Alignment:
| Q |
653 |
acaacaacaccaaaaccagatttagcttcactcattaatcaactcagttct |
703 |
Q |
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| T |
6299993 |
acaacaacaccaaaaccagatttagcttctcttgttgatcaactcagttct |
6299943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 456
Target Start/End: Complemental strand, 6315104 - 6314954
Alignment:
| Q |
302 |
accattcataatccttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacc--tacatacgtttgaatttaagg |
399 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || || | ||| ||||||||||| ||| |
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| T |
6315104 |
accattcataatcattgttgt----gcagttgttgatgacagtaaaaataaattctg--cacatgatgaaaatgtcccctgcatgcgtttgaatttgagg |
6315011 |
T |
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| Q |
400 |
tcatatgtcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
456 |
Q |
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| T |
6315010 |
tcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatg |
6314954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 535
Target Start/End: Complemental strand, 55983990 - 55983907
Alignment:
| Q |
452 |
atatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctctc |
535 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||| ||||||| | ||||||||||||||||| |
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| T |
55983990 |
atatgtcaatcactttcattttcctcttctctaaaaggacatgaaatttgacattgaacccctcgtcttatgagtttttctctc |
55983907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 587
Target Start/End: Complemental strand, 55983861 - 55983824
Alignment:
| Q |
550 |
ttttttggtactcttaacctccataactttgtccactc |
587 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
55983861 |
ttttttggtactcttaacctccacaactttgtccactc |
55983824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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