View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_100 (Length: 239)
Name: NF11854_low_100
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 36628135 - 36628338
Alignment:
| Q |
20 |
atgtactgccttaacattaccacaagtggttatatagtgcataaattataagattaagactagtatgaagcatgaactaacgtatgttttggtnnnnnnn |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
36628135 |
atgtactgccttaacaataccacaagtggttatatagtgcataaattataagattaagactagtatgaagcatgaacaaacgtatcttttggtaaaaaaa |
36628234 |
T |
|
| Q |
120 |
nnnntcacacagttgaccaaagtgtattattttaggaaagagatacatttgctttgttatcggtatgaccaaatcaatttttgaatttgtttttgtagtg |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
36628235 |
aaaatcacacagttgaccaaagtgtattattttaggaaaaagatacatttgctttgttatcggtatcaccaaatcaatttttgaatttgtttttgcagtg |
36628334 |
T |
|
| Q |
220 |
tctc |
223 |
Q |
| |
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|||| |
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| T |
36628335 |
tctc |
36628338 |
T |
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