View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_101 (Length: 239)
Name: NF11854_low_101
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_101 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11630777 - 11630998
Alignment:
| Q |
1 |
cgggttctaccaaaagattcatacttaactgaagcttattaactctgcaacatgcgttctaatataagttaataacatggtttcatggtgcaggaagtgc |
100 |
Q |
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| T |
11630777 |
cgggttctacaaaaagattcatacttaactgaagcttattaactctgcaacatgcagtctaatataagttaataacatggttttatggtgcaggaagtgc |
11630876 |
T |
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| Q |
101 |
agaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctga |
200 |
Q |
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| T |
11630877 |
agaagtattttaccgattacatactcaatgattgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctga |
11630976 |
T |
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| Q |
201 |
tccatgtgttgagcttgcaaag |
222 |
Q |
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| T |
11630977 |
tccatgtgttgagcttgcaaag |
11630998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 11675793 - 11675643
Alignment:
| Q |
72 |
ataacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgca |
171 |
Q |
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| T |
11675793 |
ataacatggttttatggtgcaggaggtggaggagtattttaccaattacatgctcaatgacagtcttggaataatttccaatgcacacactgtctttgca |
11675694 |
T |
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| Q |
172 |
gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag |
222 |
Q |
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| T |
11675693 |
gataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaag |
11675643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 11683377 - 11683227
Alignment:
| Q |
72 |
ataacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgca |
171 |
Q |
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| T |
11683377 |
ataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtctttgca |
11683278 |
T |
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| Q |
172 |
gacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag |
222 |
Q |
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| T |
11683277 |
gataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaag |
11683227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 11639611 - 11639760
Alignment:
| Q |
73 |
taacatggtttcatggtgcaggaagtgcagaagtattttaccgattacatactcaacgattgtcttggaataattgccaatgcacacactgtctttgcag |
172 |
Q |
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| T |
11639611 |
taacatggtttaatggtgcaggaggtggaggagtatttcaccaattatatactcaatgacagtctcggaataattgccaatgcacacacagtctttgcag |
11639710 |
T |
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| Q |
173 |
acaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaag |
222 |
Q |
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| T |
11639711 |
ataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaag |
11639760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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