View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_102 (Length: 239)
Name: NF11854_low_102
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_102 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40166269 - 40166507
Alignment:
| Q |
1 |
cttacgatgaaaccaacaaccaggatgatatgagcagcaagatgatatacatgtatacataggaaacaaagtaggtgggaaatccggtgtacatgtatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | | |||||||||||||||||| |||||| |
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| T |
40166269 |
cttacgatgaaaccaacaaccaggatgatatgagcagcaggatgatatacatgtatatataggaaacaaaatggatgggaaatccggtgtacacgtatgg |
40166368 |
T |
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| Q |
101 |
gaaagccaacatatatggtgagtggagagtttttagttttcaaggctgcatcgcaaaggatgaaaattaatgcagtctattgtatcaatatagcacgttg |
200 |
Q |
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| T |
40166369 |
gaaagccaacatatatggtgagtggagagtttttagttttcaaggccgcatcgcaaaggatgaaaattaatgcagtctattgtatcagtatagcacgttg |
40166468 |
T |
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| Q |
201 |
aaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| |
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| T |
40166469 |
aaaaatggaggaaaaataggagaaaatttctctgattcc |
40166507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 48762194 - 48762119
Alignment:
| Q |
164 |
aaattaatgcagtctattgtatcaatatagcacgttgaaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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| T |
48762194 |
aaattaatgcagttcattgtatcaagatggcacgttaaaaattggaggaaaataaggagaatttttctctgattcc |
48762119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 907493 - 907639
Alignment:
| Q |
93 |
atgtatgggaaagccaacatatatggtgagtggagagtttttagttttcaaggctgcatcgcaaaggatgaaaattaatgcagtctattgtatcaatata |
192 |
Q |
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| T |
907493 |
atgtatgggaaagccaacatatattgtgagtggagaggttttagttttctaggcggcatagcaaaggatggaaattaatgcagtctattgtatcaatata |
907592 |
T |
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| Q |
193 |
gcacgttgaaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
907593 |
gcactttgaaaagtggaggaaaaataggagaaaatttctctgattcc |
907639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 8609227 - 8609373
Alignment:
| Q |
93 |
atgtatgggaaagccaacatatatggtgagtggagagtttttagttttcaaggctgcatcgcaaaggatgaaaattaatgcagtctattgtatcaatata |
192 |
Q |
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| T |
8609227 |
atgtatgggaaagccaacatatatggtgagtggagaggttttagttttctaggcggcatagcaaaggatggaaattaatgcagtctattgtatcaatatt |
8609326 |
T |
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| Q |
193 |
gcacgttgaaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8609327 |
gcacattgaaaagtggaggaaaaataggagaaaatttctctgattcc |
8609373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8609173 - 8609228
Alignment:
| Q |
1 |
cttacgatgaaaccaacaaccaggatgatatgagcagcaagatgatatacatgtat |
56 |
Q |
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| T |
8609173 |
cttacgatgaaaccaacaaccaggatgatatgagcagcaagatgatatacatgtat |
8609228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 907439 - 907494
Alignment:
| Q |
1 |
cttacgatgaaaccaacaaccaggatgatatgagcagcaagatgatatacatgtat |
56 |
Q |
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| T |
907439 |
cttacgatgaaaccaacaaccaggatgatatgaacagcaagatgatattcatgtat |
907494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 5169916 - 5169841
Alignment:
| Q |
164 |
aaattaatgcagtctattgtatcaatatagcacgttgaaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||| || |||||||||| |
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| T |
5169916 |
aaattaatgcagttcattgtatcaagatggcacgttaaaaattggaggaaaataaggagaatttttctctgattcc |
5169841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 5242403 - 5242600
Alignment:
| Q |
42 |
atgatatacatgtatacataggaaacaaagtaggtgggaaatccggtgtacatgtatgggaaagccaacatatatggtgagtggagagtttttagttttc |
141 |
Q |
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|||||||||||||||| |||||||||||||| ||||||| | |||||| |||||||||||| | || ||| | ||||||||||| ||| |||||| |
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| T |
5242403 |
atgatatacatgtatatataggaaacaaagtgggtgggataatcggtgttaatgtatgggaaaactaaatgatacgctgagtggagagctttgtgttttc |
5242502 |
T |
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| Q |
142 |
aaggctgcatcgcaaaggatgaaaattaatgcagtctattgtatcaatatagcacgttgaaaagtggaggaaaaataggagaaaattactctgattcc |
239 |
Q |
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| | | || | || ||||| ||||||||||| | ||||||||||||| ||||||| |||||||||||||||| ||| ||| || |||||||||| |
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| T |
5242503 |
tatgtgggatagtaagggatggaaattaatgcaattcattgtatcaatatggcacgttaaaaagtggaggaaaaaaaggctaaattttctctgattcc |
5242600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 10559912 - 10559944
Alignment:
| Q |
169 |
aatgcagtctattgtatcaatatagcacgttga |
201 |
Q |
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| T |
10559912 |
aatgcagtctattgtatcaatatagcacgttga |
10559944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 43605377 - 43605451
Alignment:
| Q |
164 |
aaattaatgcagtctattgtatcaatatagcacgttgaaaagtggaggaaaaataggagaaaattactctgattc |
238 |
Q |
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|||||||||||||| | |||||||| |||||||||||| || ||||||||||||||||||||| | ||||||||| |
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| T |
43605377 |
aaattaatgcagtccaatgtatcaacatagcacgttgagaattggaggaaaaataggagaaaaattctctgattc |
43605451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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