View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_103 (Length: 238)
Name: NF11854_low_103
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_103 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6898672 - 6898442
Alignment:
| Q |
1 |
attagcatgtttgcggaagcatggagatgagtttggaaaacaagattagagtcatggaaatgtaaatagcaggagtgatctcatgaaca------tttac |
94 |
Q |
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| T |
6898672 |
attagcatgtttgcggaagcatggagatgagtttggaaaacaagattagagtcatggaaatgtaaatagcaggagtgatctcatgaacaaggagatttac |
6898573 |
T |
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| Q |
95 |
taagatgtttgtgaggnnnnnnn-gaatagaagtagaaccaaaacaacaaatc-tttaatagtttctattataagccgttgatctatcattaaacaaatg |
192 |
Q |
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| T |
6898572 |
taagatgtttgtgaggaaaaaaaagaatagaagtagaaccaaaacgacaaatcatttaatagtttctattataagccgttgatttatcattaaacaaatg |
6898473 |
T |
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| Q |
193 |
aagggctaagattgttcactggagaaaatct |
223 |
Q |
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| T |
6898472 |
aagggctaagattgttcactggagaaaatct |
6898442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 6899118 - 6899171
Alignment:
| Q |
167 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6899118 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
6899171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 29903816 - 29903764
Alignment:
| Q |
168 |
ccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
220 |
Q |
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| T |
29903816 |
ccgttgatctatcattaaacaaatgaagggctaatattgttgaccggagaaaa |
29903764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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