View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_105 (Length: 230)

Name: NF11854_low_105
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_105
NF11854_low_105
[»] chr3 (5 HSPs)
chr3 (95-216)||(29100267-29100388)
chr3 (75-193)||(5366162-5366281)
chr3 (167-216)||(4386858-4386907)
chr3 (167-216)||(25517089-25517138)
chr3 (168-217)||(41163177-41163226)
[»] chr4 (4 HSPs)
chr4 (75-216)||(37781969-37782110)
chr4 (75-211)||(34670515-34670650)
chr4 (112-211)||(1983188-1983285)
chr4 (164-211)||(8114676-8114723)
[»] chr2 (4 HSPs)
chr2 (94-216)||(18674270-18674391)
chr2 (75-216)||(28770624-28770764)
chr2 (77-211)||(15903742-15903875)
chr2 (77-216)||(2869544-2869683)
[»] chr1 (7 HSPs)
chr1 (75-216)||(25116551-25116691)
chr1 (112-216)||(35109424-35109527)
chr1 (127-210)||(32736898-32736980)
chr1 (121-206)||(17345415-17345499)
chr1 (167-202)||(10997077-10997112)
chr1 (173-214)||(918427-918468)
chr1 (77-154)||(9476430-9476507)
[»] chr8 (5 HSPs)
chr8 (77-204)||(7493025-7493151)
chr8 (77-211)||(3051232-3051365)
chr8 (127-204)||(8863527-8863604)
chr8 (77-205)||(19752246-19752372)
chr8 (183-214)||(8965809-8965840)
[»] chr6 (4 HSPs)
chr6 (93-216)||(33721426-33721549)
chr6 (119-216)||(1114998-1115094)
chr6 (94-206)||(30517998-30518108)
chr6 (183-211)||(4045442-4045470)
[»] chr5 (5 HSPs)
chr5 (168-206)||(3651617-3651655)
chr5 (113-216)||(2630338-2630440)
chr5 (167-214)||(6741961-6742008)
chr5 (77-194)||(28832386-28832502)
chr5 (168-216)||(33030882-33030930)
[»] chr7 (6 HSPs)
chr7 (77-206)||(20284206-20284334)
chr7 (88-216)||(3047362-3047488)
chr7 (112-211)||(5817157-5817255)
chr7 (169-218)||(761279-761328)
chr7 (77-205)||(9185026-9185153)
chr7 (77-205)||(9189859-9189986)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-216)||(102436-102484)
[»] scaffold0002 (1 HSPs)
scaffold0002 (128-216)||(14789-14878)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 29100388 - 29100267
Alignment:
Q  95 gtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattag 194  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  29100388 gtgagattatattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtgtaggtgacttgaaaaacgagtagaaattag 29100289  T
Q  195 ggtttgttctttatgagttttt 216  Q
    |||||||||||| |||||||||    
T  29100288 ggtttgttctttgtgagttttt 29100267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 5366162 - 5366281
Alignment:
Q  75 atttgtaaacatattggatagtgagatttaattaattg-aaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgact 173  Q
    |||||||||||  |||| |||| |||||| | |||||| ||||||  |||||||||||||||| || || |||| ||||||||||| ||| | |||||||    
T  5366162 atttgtaaacaccttgggtagtaagatttcaataattggaaggatcgaaaagtttcctttagtgttttcgcttaggattcatttattagtgtgggtgact 5366261  T
Q  174 tgaaaaacgggtagaaatta 193  Q
     |||||| ||||||||||||    
T  5366262 agaaaaaagggtagaaatta 5366281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 4386858 - 4386907
Alignment:
Q  167 ggtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    |||||||||||||| | |||||||||||| |||||||||| |||| ||||    
T  4386858 ggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagctttt 4386907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 25517138 - 25517089
Alignment:
Q  167 ggtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||||||||||   ||||||||||||||||||||||| |||| ||||    
T  25517138 ggtgacttgaaaaataagtagaaattagggtttgttctttgtgagctttt 25517089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 41163177 - 41163226
Alignment:
Q  168 gtgacttgaaaaacgggtagaaattagggtttgttctttatgagtttttg 217  Q
    ||||||||| ||  |||| ||||||||||||||||||||||||| |||||    
T  41163177 gtgacttgataactgggtcgaaattagggtttgttctttatgagcttttg 41163226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 37782110 - 37781969
Alignment:
Q  75 atttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgactt 174  Q
    |||||||||||  |||| ||||||||||| |||| | |||| || ||||||| || |||||| || ||||||| |||||||||| |||| ||||||||||    
T  37782110 atttgtaaacaccttgggtagtgagatttcattattggaagaatcaaaaagtctcttttagtgttttctcttaagattcatttacgagtgtaggtgactt 37782011  T
Q  175 gaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    |||||| |||||||||||| | |||||||||| |||||||||    
T  37782010 gaaaaatgggtagaaattaagatttgttctttgtgagttttt 37781969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 34670515 - 34670650
Alignment:
Q  75 atttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgactt 174  Q
    |||||||| ||| |||| ||||||||| | ||||   |||||||  |||||||| ||||||| || ||||||| ||||||||  ||||| |  |||||||    
T  34670515 atttgtaagcatcttgggtagtgagatctcattagaggaaggatctaaaagttttctttagtgttttctcttaggattcattg-tgagtgtgagtgactt 34670613  T
Q  175 gaaaaacgggtagaaattagggtttgttctttatgag 211  Q
    |||||| || ||||||||| | |||||||||| ||||    
T  34670614 gaaaaatggatagaaattatgatttgttctttgtgag 34670650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 1983188 - 1983285
Alignment:
Q  112 gaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgag 211  Q
    |||||||||||||| ||||||| |  || ||||||| |||||||| | |||| |||||||||||||||| || ||||||||| | |||||||||| ||||    
T  1983188 gaaggataaaaaagcttccttttgggttttctcttaggattcattga-gagtgtaggtgacttgaaaaa-ggatagaaattatgttttgttctttgtgag 1983285  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 8114676 - 8114723
Alignment:
Q  164 ctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgag 211  Q
    ||||||||||||||||| || || ||||||||||||||||||| ||||    
T  8114676 ctaggtgacttgaaaaatggatacaaattagggtttgttctttgtgag 8114723  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 18674270 - 18674391
Alignment:
Q  94 agtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaatta 193  Q
    |||||||||| |||| ||||||||| |||||| |||||||| | || ||||||||||||||||||||||| | |||||||||||||| || |||||||||    
T  18674270 agtgagatttcatta-ttgaaggatcaaaaagcttcctttaatgttttctcttatgattcatttatgagtgtgggtgacttgaaaaatggatagaaatta 18674368  T
Q  194 gggtttgttctttatgagttttt 216  Q
     |||||||||||| |||| ||||    
T  18674369 tggtttgttctttgtgagctttt 18674391  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 28770624 - 28770764
Alignment:
Q  75 atttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgactt 174  Q
    |||||||||||  |||| ||||||||| | ||||  |||||||||||||||||||||||||| || ||||||| |||||| ||  |||| |   ||||||    
T  28770624 atttgtaaacaccttgggtagtgagatctcattagctgaaggataaaaaagtttcctttagtgttttctcttaggattca-ttgcgagtgtgtatgactt 28770722  T
Q  175 gaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    |||||| ||||||||||||| ||||||||||| |||| ||||    
T  28770723 gaaaaatgggtagaaattagagtttgttctttgtgagctttt 28770764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 15903742 - 15903875
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    ||||||||| |||||||| |||||||| |  | | ||| |||||||||| || |||| || || |||| || |||||||| | |||| | ||||||||||    
T  15903742 ttgtaaacacattggataatgagatttcaccattggaatgataaaaaagatttcttttgtgttttctcataggattcattga-gagtgtgggtgacttga 15903840  T
Q  177 aaaacgggtagaaattagggtttgttctttatgag 211  Q
    |||| |||||||||||||  |||||||||| ||||    
T  15903841 aaaatgggtagaaattagaatttgttctttgtgag 15903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 2869544 - 2869683
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    ||||||||| ||||| |||||||||||    | | |||| || |||||| |||| ||||| || ||||||| |||||||| | |||| | ||||||||||    
T  2869544 ttgtaaacacattgggtagtgagatttcgccattggaagaatcaaaaagcttccgttagtgttttctcttaggattcattga-gagtgtgggtgacttga 2869642  T
Q  177 aaaacgggtagaaattagg-gtttgttctttatgagttttt 216  Q
    |||| ||||||||||||||  |||||||||| |||| ||||    
T  2869643 aaaatgggtagaaattaggtttttgttctttgtgagctttt 2869683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 25116551 - 25116691
Alignment:
Q  75 atttgtaaacatatt-ggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgact 173  Q
    ||||||||||| ||| || ||||||||||| |||| ||||||||| |||||  || ||||||| || ||||||| |||| |||||||||| | | |||||    
T  25116551 atttgtaaacacattagggtagtgagatttcattatttgaaggattaaaaaaatttctttagtgttttctcttaagatttatttatgagtgtggatgact 25116650  T
Q  174 tgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||  ||||| ||||||||| || |||||| |||||||||    
T  25116651 tgaaaa--gggtaaaaattaggggttcttctttgtgagttttt 25116691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 35109424 - 35109527
Alignment:
Q  112 gaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgag 211  Q
    |||||||||||||| ||||||||||||| |||| || |||||| || ||||| |  ||||||||||||  |||||||||||| |||||||||||| ||||    
T  35109424 gaaggataaaaaagcttcctttagtattttctcgtaggattca-ttgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgag 35109522  T
Q  212 ttttt 216  Q
     ||||    
T  35109523 ctttt 35109527  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 32736898 - 32736980
Alignment:
Q  127 ttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatga 210  Q
    |||||||||  || ||||||| ||||||||  ||||| | | |||||||||||| |||||||||||||||||||||||||||||    
T  32736898 ttcctttagggttttctcttaggattcattg-tgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttctttatga 32736980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 17345415 - 17345499
Alignment:
Q  121 aaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttcttt 206  Q
    |||||||| |||| || || ||||||| |||||||| | |||| | |||||||| ||||| |||||||||||||| ||||||||||    
T  17345415 aaaagttttcttttgtgttttctcttaagattcattaa-gagtgtgggtgacttaaaaaatgggtagaaattaggttttgttcttt 17345499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 10997112 - 10997077
Alignment:
Q  167 ggtgacttgaaaaacgggtagaaattagggtttgtt 202  Q
    |||||||||||||| |||||||||||||||||||||    
T  10997112 ggtgacttgaaaaatgggtagaaattagggtttgtt 10997077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 918427 - 918468
Alignment:
Q  173 ttgaaaaacgggtagaaattagggtttgttctttatgagttt 214  Q
    |||||||| |||||||||||| |||||||||||| |||||||    
T  918427 ttgaaaaatgggtagaaattatggtttgttctttgtgagttt 918468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 9476507 - 9476430
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattca 154  Q
    |||||||||| |||| ||||||||||| |  | ||||||||| |||||| ||||||| || || ||||||| ||||||    
T  9476507 ttgtaaacatcttgggtagtgagatttcaccatttgaaggatcaaaaagcttccttttgtgttttctcttaagattca 9476430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 7493025 - 7493151
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| |  | | ||||||| |||||| |||||||||| || | ||||| |||| ||| | |||| | ||||||||||    
T  7493025 ttgtaaacaccttgggtagtgagatttcacaattagaaggatcaaaaagcttcctttagtgttttttcttaggatttattga-gagtgtgggtgacttga 7493123  T
Q  177 aaaacgggtagaaattagggtttgttct 204  Q
    ||||| ||||||||||||| ||||||||    
T  7493124 aaaacaggtagaaattaggttttgttct 7493151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 3051365 - 3051232
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||| |||| ||||||||||| |  | | ||| ||| |||||| ||||||| ||  | ||||||| |||||||| | |||| || ||||| |||    
T  3051365 ttgtaaacatcttgggtagtgagatttcaccattggaaagatcaaaaagcttccttttgtgctttctcttaggattcattga-gagtgtaagtgacatga 3051267  T
Q  177 aaaacgggtagaaattagggtttgttctttatgag 211  Q
    |||| |||||||||||| | |||||||||| ||||    
T  3051266 aaaatgggtagaaattaagttttgttctttgtgag 3051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 8863527 - 8863604
Alignment:
Q  127 ttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttct 204  Q
    |||||||| | || ||||||  |||||||||||| || |  ||||||||||||| |||||||||||| ||||||||||    
T  8863527 ttcctttaatgttttctctttagattcatttatgtgtgtgagtgacttgaaaaatgggtagaaattaaggtttgttct 8863604  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 19752246 - 19752372
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| || | | ||||||| |||||| ||||||| || || ||||||| |||||||| | |||| | |||||  |||    
T  19752246 ttgtaaacaccttgggtagtgagatttcatcattggaaggatcaaaaagcttccttt-gtgttttctcttaggattcattga-gagtgtgggtgatatga 19752343  T
Q  177 aaaacgggtagaaattagggtttgttctt 205  Q
    |||| ||||||||||||||  ||||||||    
T  19752344 aaaatgggtagaaattaggacttgttctt 19752372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 8965840 - 8965809
Alignment:
Q  183 ggtagaaattagggtttgttctttatgagttt 214  Q
    ||||||||||||||||||||||||||||||||    
T  8965840 ggtagaaattagggtttgttctttatgagttt 8965809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 33721426 - 33721549
Alignment:
Q  93 tagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaatt 192  Q
    ||||||||||| |||| | ||| ||| |||||| | |||||||| || ||||||| |||||||||| |||| |  ||||| | ||||| |||   |||||    
T  33721426 tagtgagatttcattattggaatgatgaaaaagctccctttagtgttttctcttaggattcatttaggagtgtgtgtgacctaaaaaatgggggaaaatt 33721525  T
Q  193 agggtttgttctttatgagttttt 216  Q
    ||| ||||||||||||||||||||    
T  33721526 aggttttgttctttatgagttttt 33721549  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 1114998 - 1115094
Alignment:
Q  119 aaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||||||||||| || || |||||||  |||||||  ||||| | |||||||||||||| || |||||||||||||||||| ||| |||| ||||    
T  1114998 aaaaaagtttccttttgtgttttctcttaatattcattg-tgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgagctttt 1115094  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 30517998 - 30518108
Alignment:
Q  94 agtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaatta 193  Q
    |||||||||| |||| | ||||||| ||||| || |||||||| || ||||| | ||||||||| ||||| | ||| ||||||||||  |||||||||||    
T  30517998 agtgagatttcattattggaaggatcaaaaactt-cctttagtgttttctctaa-gattcatttgtgagtgtgggtaacttgaaaaataggtagaaatta 30518095  T
Q  194 gggtttgttcttt 206  Q
     ||||||||||||    
T  30518096 aggtttgttcttt 30518108  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 4045442 - 4045470
Alignment:
Q  183 ggtagaaattagggtttgttctttatgag 211  Q
    |||||||||||||||||||||||||||||    
T  4045442 ggtagaaattagggtttgttctttatgag 4045470  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 3651655 - 3651617
Alignment:
Q  168 gtgacttgaaaaacgggtagaaattagggtttgttcttt 206  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  3651655 gtgacttgaaaaatgggtagaaattagggtttgttcttt 3651617  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 2630440 - 2630338
Alignment:
Q  113 aaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgagt 212  Q
    |||||| |||||| |||||||||| || ||||||| ||||||||  |||||   |||||||||||||| |  || |||||||| |||||||||| || ||    
T  2630440 aaggatcaaaaagcttcctttagtgttttctcttaggattcattg-tgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtgtgt 2630342  T
Q  213 tttt 216  Q
    ||||    
T  2630341 tttt 2630338  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 6742008 - 6741961
Alignment:
Q  167 ggtgacttgaaaaacgggtagaaattagggtttgttctttatgagttt 214  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||||    
T  6742008 ggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagttt 6741961  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 28832502 - 28832386
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| |  | | ||||||| |||||| ||||||| || || ||||||| |||||||| | |||| | |||||  |||    
T  28832502 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatga 28832404  T
Q  177 aaaacgggtagaaattag 194  Q
    |||| |||||||||||||    
T  28832403 aaaatgggtagaaattag 28832386  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 33030882 - 33030930
Alignment:
Q  168 gtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||||||||| |||||||||||| | |||||||||| |||| ||||    
T  33030882 gtgacttgaaaaatgggtagaaattatgttttgttctttgtgagctttt 33030930  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 20284334 - 20284206
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| |  | | ||||||| |||||| ||||||| || || ||||||| |||||||| | |||| | |||||  |||    
T  20284334 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatga 20284236  T
Q  177 aaaacgggtagaaattagggtttgttcttt 206  Q
    |||| ||||||||||||||  |||||||||    
T  20284235 aaaaagggtagaaattaggacttgttcttt 20284206  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 3047488 - 3047362
Alignment:
Q  88 ttggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtag 187  Q
    |||| ||||||||||| || | | ||||||| |||||| ||||||| || || | ||||| |||||||| | |||| | |||||||| ||||| ||||||    
T  3047488 ttgggtagtgagatttcatcattggaaggatcaaaaagcttccttttgtgttttatcttaagattcattga-gagtgtgggtgactt-aaaaatgggtag 3047391  T
Q  188 aaattagggtttgttctttatgagttttt 216  Q
    ||||||||  ||||||||| |||| ||||    
T  3047390 aaattaggtcttgttctttgtgagctttt 3047362  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 5817157 - 5817255
Alignment:
Q  112 gaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgag 211  Q
    ||||||| |||||| ||||||| || || | ||||| |||||||| | |||| |  ||||||||||||| || ||||||||||| |||||||||| ||||    
T  5817157 gaaggatcaaaaagcttccttttgtgttttttcttaggattcattga-gagtgtgagtgacttgaaaaatggatagaaattaggttttgttctttgtgag 5817255  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 761328 - 761279
Alignment:
Q  169 tgacttgaaaaacgggtagaaattagggtttgttctttatgagtttttga 218  Q
    |||||||||||| ||||||||||||| |||| |||||| |||| ||||||    
T  761328 tgacttgaaaaatgggtagaaattagtgttttttctttgtgagcttttga 761279  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 9185026 - 9185153
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| |  | | ||||||| |||||| ||||||  || || ||||||| |||||||| | |||| | |||||  |||    
T  9185026 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa-gagtgtgggtgatatga 9185124  T
Q  177 aaaacgggtagaaattagggtttgttctt 205  Q
    |||| ||||||||||||||  ||||||||    
T  9185125 aaaatgggtagaaattaggacttgttctt 9185153  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 9189859 - 9189986
Alignment:
Q  77 ttgtaaacatattggatagtgagatttaattaattgaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtctaggtgacttga 176  Q
    |||||||||  |||| ||||||||||| |  | | ||||||| |||||| ||||||  || || ||||||| |||||||| | |||| | |||||  |||    
T  9189859 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa-gagtgtgggtgatatga 9189957  T
Q  177 aaaacgggtagaaattagggtttgttctt 205  Q
    |||| ||||||||||||||  ||||||||    
T  9189958 aaaatgggtagaaattaggacttgttctt 9189986  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 102436 - 102484
Alignment:
Q  168 gtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| ||||    
T  102436 gtgacttgaaaaatgggtagaaattagggtttgttttttgtgagctttt 102484  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 14878 - 14789
Alignment:
Q  128 tcctttagtattatctcttatgattca-tttatgagtctaggtgacttgaaaaacgggtagaaattagggtttgttctttatgagttttt 216  Q
    ||||||||| || ||||||| |||||| ||| ||||| | ||||||||||||||  ||||| || ||||||| ||||||| |||| ||||    
T  14878 tcctttagtgttttctcttaggattcactttgtgagtgtgggtgacttgaaaaataggtaggaactagggttagttctttgtgagctttt 14789  T

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