View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_106 (Length: 224)
Name: NF11854_low_106
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_106 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6317618 - 6317841
Alignment:
| Q |
1 |
tagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6317618 |
tagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaattctagcctttatctcaaacca |
6317717 |
T |
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| Q |
101 |
aaccctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttggaggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6317718 |
aaccctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttcgaggaaa |
6317817 |
T |
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| Q |
201 |
cttccaatttgatatcatgaagaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
6317818 |
cttccaatttgatatcatgaagaa |
6317841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6297873 - 6297997
Alignment:
| Q |
1 |
tagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaacca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || ||||||| ||| ||| ||||||||| |
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| T |
6297873 |
tagcccaggaaactgaatcagattcaataaaaggtttaactttcttgatcgaaagaggcttgagtctgctgtcctcaactcgggccattacctcaaacca |
6297972 |
T |
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| Q |
101 |
aaccctttcaactcttggccttgtt |
125 |
Q |
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| T |
6297973 |
gaccctttcaacacttggccttgtt |
6297997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 33186418 - 33186384
Alignment:
| Q |
123 |
gttttgtgagactctctaggagaacttatgaaaac |
157 |
Q |
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| T |
33186418 |
gttttgtgagactgtctaggagaacttatgaaaac |
33186384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 34034210 - 34034175
Alignment:
| Q |
123 |
gttttgtgagactctctaggagaacttatgaaaaca |
158 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
34034210 |
gttttgtgagactctttaggagaacttatgaaaaca |
34034175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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